Cite this strain

"Hydrogenobacter subterraneus" (NBRC 16485, IFO 16485, JCM 10560)

BacDive ID 160993

Type strain

Culture col. no. NBRC 16485 IFO 16485 JCM 10560

NCBI tax ID(s) 92642

Special Collections JCM

Links

Name and taxonomic classification

"Hydrogenobacter subterraneus" JCM 10560 is a thermophilic bacterium that was isolated from Water sample from a deep subsurface geothermal water pool at a depth of 1,500 m in the Hacchoubaru geothermal plant.

thermophilic 16S sequence Bacteria

Culture Collection Numbers

NBRC 16485 IFO 16485 JCM 10560

Last LPSN update 2024-12-09 10:52:22

Domain Bacteria

Phylum Aquificota

Class Aquificia

Order Aquificales

Family Aquificaceae

Genus Hydrogenobacter

Species "Hydrogenobacter subterraneus"

Full scientific name Hydrogenobacter subterraneus Takai et al. 2001

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	75	thermophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Water sample from a deep subsurface geothermal water pool at a depth of 1,500 m in the Hacchoubaru geothermal plant	Oita	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB026268 (>99% sequence identity) for Hydrogenobacter from Microbeatlas

Aquatic Samples	181
Soil Samples	2
Animal Samples	15
Plant Samples	5
Total Samples	203

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	44.7	high performance liquid chromatography (HPLC)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Hydrogenobacter subterranea gene for 16S ribosomal RNA, partial sequence	AB026268	1497		92642
124043	Hydrogenobacter subterraneus 16S-23S rRNA intergenic spacer containing tRNA-Ile and tRNA-Ala genes, type strain IFO 16485T	AM259528	322		92642

Genome-based predictions

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hydrogenobacter subterraneus sp. nov., an extremely thermophilic, heterotrophic bacterium unable to grow on hydrogen gas, from deep subsurface geothermal water.	Takai K, Komatsu T, Horikoshi K	Int J Syst Evol Microbiol	10.1099/00207713-51-4-1425	2001

Culture collection no.

Culture collection no.
NBRC 16485
IFO 16485
JCM 10560

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

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