Cite this strain

Natronolimnobius baerhuensis (CGMCC 1.3597, JCM 12253)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161205

Type strain

Culture col. no. CGMCC 1.3597 JCM 12253

NCBI tax ID(s) 1295126 253108

Special Collections JCM

Links

Name and taxonomic classification

Natronolimnobius baerhuensis JCM 12253 is a mesophilic archaeon that was isolated from Baerhu Soda Lake in Inner Mongolia Autonomous Region.

mesophilic genome sequence 16S sequence Archaea

SI-ID 231867

JCM 12253, CGMCC 1.3597

Last LPSN update 2024-12-09 10:52:23

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Natrialbaceae

Genus Natronolimnobius

Species Natronolimnobius baerhuensis

Full scientific name Natronolimnobius baerhuensis Itoh et al. 2005

BacDive ID	Other strains from **Natronolimnobius baerhuensis** (1)	Type strain
161206	N. baerhuensis JCM 12254, CGMCC 1.3598

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	90.2

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Observation

67770

Observationquinones: MK-8 and MK-8(H₂)

Spore formation

@ref	Spore formation	Confidence
125439		94.5

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Baerhu Soda Lake in Inner Mongolia Autonomous Region	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB125106 (>99% sequence identity) for Natronolimnobius baerhuensis subclade from Microbeatlas

Aquatic Samples	2
Soil Samples
Animal Samples
Plant Samples
Total Samples	2

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	60.1	genome sequence analysis
67770	59.2	high performance liquid chromatography (HPLC)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Natronolimnobius baerhuensis gene for 16S rRNA, partial sequence, strain: IHC-005	AB125106	1435		253108
124043	Natronolimnobius baerhuensis gene for 16S rRNA, complete sequence, strain: JCM 12253.	AB663471	1471		253108

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Natronolimnobius baerhuensis JCM 12253	2740891997	draft	JGI IMG/M	1295126
67770	Natronolimnobius baerhuensis JCM 12253 = CGMCC 1.3597	GCA_001316185	contig		1295126
67770	Natronolimnobius baerhuensis CGMCC 1.3597	GCA_002177135	contig		253108
66792	Natronolimnobius baerhuensis strain CGMCC 1.3597	253108.4	wgs	PATRIC	253108
66792	Natronolimnobius baerhuensis JCM 12253 = CGMCC 1.3597	1295126.4	wgs	PATRIC	1295126

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Natronolimnobius baerhuensis JCM 12253 = CGMCC 1.3597
NCBI: GCA_001316185

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	90.20	no
125439	motility	BacteriaNetⓘ	yes	62.60	no
125439	spore_formation	BacteriaNetⓘ	no	94.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	84.90	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Natronolimnobius baerhuensis CGMCC 1.3597(T), an Aerobic Haloalkaliphilic Archaeon Isolated from a Soda Lake.	Guo X, Liao Z, Yan Y, Holtzapple M, Hu Q, Zhao B	Genome Announc	10.1128/genomeA.00710-17	2017
Phylogeny	Natronolimnobius baerhuensis gen. nov., sp. nov. and Natronolimnobius innermongolicus sp. nov., novel haloalkaliphilic archaea isolated from soda lakes in Inner Mongolia, China.	Itoh T, Yamaguchi T, Zhou P, Takashina T	Extremophiles	10.1007/s00792-004-0426-z	2004

Straininfo Link

@ref	Straininfo	Culture collections
113275	231867	JCM 12253, CGMCC 1.3597

Culture collection no.

Culture collection no.
CGMCC 1.3597
JCM 12253

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#113275	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID231867.1 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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