Cite this strain

"Paenibacillus alba" (LMG 31323, KEMC 7302-005, JCM 18165)

BacDive ID 162188

Type strain

Culture col. no. LMG 31323 KEMC 7302-005 JCM 18165

NCBI tax ID(s) 1197127

Special Collections JCM

Links

Name and taxonomic classification

"Paenibacillus alba" JCM 18165 is a spore-forming, mesophilic bacterium that was isolated from Peat soil.

spore-forming mesophilic genome sequence 16S sequence Bacteria

Culture Collection Numbers

LMG 31323 KEMC 7302-005 JCM 18165

Last LPSN update 2024-12-09 10:52:30

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species "Paenibacillus alba"

Full scientific name Paenibacillus alba Kim et al. 2015

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Observation

67770

Observationquinones: MK-7

Spore formation

@ref	Spore formation	Confidence
125438		90.625
125439		92.4

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.8

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code
67770	Peat soil	Prokopyevsk, Kemerovo Oblast	Russia	RUS

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	49.9	high performance liquid chromatography (HPLC)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Paenibacillus sp. J20-6 16S ribosomal RNA gene, partial sequence	JQ966212	1478		1197127

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Paenibacillus alba strain LMG 31323	1197127.3	wgs	PATRIC	1197127
67770	Paenibacillus alba LMG 31323	GCA_013204855	scaffold		1197127

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Paenibacillus alba LMG 31323
NCBI: GCA_013204855

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.80	no
125439	gram_stain	BacteriaNetⓘ	variable	84.80	no
125439	motility	BacteriaNetⓘ	yes	87.30	no
125439	spore_formation	BacteriaNetⓘ	yes	92.40	no

Predictions from Diaspora project based on:
Paenibacillus alba strain LMG 31323
PATRIC: 1197127.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	60.20	no
125438	anaerobic	anaerobicⓘ	no	97.43	no
125438	spore-forming	spore-formingⓘ	yes	90.63	no
125438	aerobic	aerobicⓘ	yes	67.89	no
125438	thermophilic	thermophileⓘ	no	94.52	yes
125438	flagellated	motile2+ⓘ	yes	78.57	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus alba nov., isolated from peat soil.	Kim HS, Srinivasan S, Lee SS	Curr Microbiol	10.1007/s00284-015-0795-9	2015

Culture collection no.

Culture collection no.
LMG 31323
KEMC 7302-005
JCM 18165

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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