Cite this strain

Haloplanus salinus (CGMCC 1.12127, JCM 18368)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162238

Type strain

Culture col. no. CGMCC 1.12127 JCM 18368

NCBI tax ID(s) 1126245

Special Collections JCM

Links

Name and taxonomic classification

Haloplanus salinus JCM 18368 is a mesophilic archaeon that was isolated from Marine solar saltern near the Sanya City.

mesophilic genome sequence 16S sequence Archaea

Culture Collection Numbers

CGMCC 1.12127 JCM 18368

Last LPSN update 2024-12-09 10:52:31

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Haloplanus

Species Haloplanus salinus

Full scientific name Haloplanus salinus Qiu et al. 2014

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.612

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Marine solar saltern near the Sanya City	Hainan Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JQ237126 (>99% sequence identity) for Haloplanus salinus subclade from Microbeatlas

Aquatic Samples	27
Soil Samples	5
Animal Samples	6
Plant Samples
Total Samples	38

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	67.2	thermal denaturation, midpoint method (Tm)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Haloplanus salinus strain YGH66 16S ribosomal RNA gene, partial sequence	JQ237126	1470		1126245

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
67770	Haloplanus salinus JCM 18368	GCA_003336245	contig		1126245
66792	Haloplanus salinus strain JCM 18368	1126245.3	wgs	PATRIC	1126245

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Haloplanus salinus JCM 18368
NCBI: GCA_003336245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	74.70	no
125439	gram_stain	BacteriaNetⓘ	positive	70.80	no
125439	motility	BacteriaNetⓘ	yes	52.80	no
125439	spore_formation	BacteriaNetⓘ	no	89.20	no

Predictions from Diaspora project based on:
Haloplanus salinus strain JCM 18368
PATRIC: 1126245.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	77.98	no
125438	anaerobic	anaerobicⓘ	no	81.57	no
125438	spore-forming	spore-formingⓘ	no	90.61	no
125438	aerobic	aerobicⓘ	yes	70.05	no
125438	thermophilic	thermophileⓘ	no	81.39	no
125438	flagellated	motile2+ⓘ	no	85.00	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloplanus salinus sp. nov., an extremely halophilic archaeon from a Chinese marine solar saltern.	Qiu XX, Zhao ML, Han D, Zhang WJ, Cui HL	Arch Microbiol	10.1007/s00203-013-0929-z	2013

Culture collection no.

Culture collection no.
CGMCC 1.12127
JCM 18368

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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