Cite this strain

(JCM 19032)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162368

Type strain

Culture col. no. JCM 19032

NCBI tax ID(s) 1460633

Special Collections JCM

Name and taxonomic classification

JCM 19032 is a mesophilic, Gram-negative bacterium of the family Halomonadaceae.

Gram-negative mesophilic genome sequence Bacteria

Culture Collection Numbers

JCM 19032

Last LPSN update 2024-12-09 10:52:32

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Halomonas

Full scientific name Halomonas Vreeland et al. 1980

Synonyms (8)

Bisbaumannia
Vreelandella
Onishia
Franzmannia
Deleya
Billgrantia
Litchfieldella
Volcaniella

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	100
125439	negative	97.7

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		91.444
125439		99.3

Isolation, sampling and environmental information

Safety information

Sequence information

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Halomonas sp. JCM 19032	GCA_001310355	contig		1460633
66792	Halomonas sp. JCM 19032	1460633.3	wgs	PATRIC	1460633
66792	Halomonas sp. JCM 19032	2675903421	draft	JGI IMG/M	1460633

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Halomonas sp. JCM 19032
NCBI: GCA_001310355

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	yes	82.70	no
125439	gram_stain	BacteriaNetⓘ	negative	97.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	88.00	no

Predictions from Diaspora project based on:
Halomonas sp. JCM 19032
PATRIC: 1460633.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	95.77	no
125438	spore-forming	spore-formingⓘ	no	91.44	no
125438	aerobic	aerobicⓘ	yes	82.90	no
125438	thermophilic	thermophileⓘ	no	97.00	no
125438	flagellated	motile2+ⓘ	yes	78.53	no

External links

Culture collection no.

	Culture collection no.JCM 19032
	Linkhttp://www.jcm.riken.jp/cgi-bin/jcm/jcm_number?JCM=19032

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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