Cite this strain

(JCM 19057)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162390

Type strain

Culture col. no. JCM 19057

NCBI tax ID(s) 1460651

Special Collections JCM

Name and taxonomic classification

JCM 19057 is a mesophilic, Gram-negative bacterium of the family Shewanellaceae.

Gram-negative mesophilic genome sequence Bacteria

Culture Collection Numbers

JCM 19057

Last LPSN update 2024-12-09 10:52:32

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Full scientific name Shewanella MacDonell and Colwell 1986

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.5
125439	negative	100

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.9

Isolation, sampling and environmental information

Safety information

Sequence information

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Shewanella sp. JCM 19057	GCA_001310535	contig		1460651
66792	Shewanella sp. JCM 19057	1460651.3	wgs	PATRIC	1460651
66792	Shewanella sp. JCM 19057	2681813037	draft	JGI IMG/M	1460651

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Shewanella sp. JCM 19057
NCBI: GCA_001310535

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.90	no
125439	motility	BacteriaNetⓘ	yes	83.70	no
125439	gram_stain	BacteriaNetⓘ	negative	100.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative aerobe	57.00	no

Predictions from Diaspora project based on:
Shewanella sp. JCM 19057
PATRIC: 1460651.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	92.43	no
125438	spore-forming	spore-formingⓘ	no	89.70	no
125438	aerobic	aerobicⓘ	yes	57.35	no
125438	thermophilic	thermophileⓘ	no	97.99	yes
125438	flagellated	motile2+ⓘ	yes	86.68	no

External links

Culture collection no.

	Culture collection no.JCM 19057
	Linkhttp://www.jcm.riken.jp/cgi-bin/jcm/jcm_number?JCM=19057

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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