Cite this strain

Nonlabens ulvanivorans (JCM 19296)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162468

Type strain

Culture col. no. JCM 19296

NCBI tax ID(s) 906888

Special Collections JCM

Name and taxonomic classification

Nonlabens ulvanivorans JCM 19296 is a mesophilic bacterium that was isolated from Rock surface on the coat near Nanaehama.

mesophilic genome sequence Bacteria

Culture Collection Numbers

JCM 19296

Last LPSN update 2024-12-09 10:52:32

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Nonlabens

Species Nonlabens ulvanivorans

Full scientific name Nonlabens ulvanivorans (Barbeyron et al. 2011) Yi and Chun 2012

Synonyms (1)

Persicivirga ulvanivorans

BacDive ID	Other strains from **Nonlabens ulvanivorans** (5)	Type strain
5725	N. ulvanivorans PLR, DSM 22727, CIP 110082 (type strain)
162459	N. ulvanivorans JCM 19275
162469	N. ulvanivorans JCM 19297
162470	N. ulvanivorans JCM 19298
162479	N. ulvanivorans JCM 19314

Morphology

Cell morphology

@ref	Motility	Confidence
125438		92.5
125438		98.585
125439		99.4

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.275
125439		97.6

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.9

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Rock surface on the coat near Nanaehama	Hakodate	Japan	JPN	Asia

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	35.1	genome sequence analysis

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Nonlabens ulvanivorans strain JCM19296	906888.5	wgs	PATRIC	906888
66792	Nonlabens ulvanivorans JCM 19296	2597490291	draft	JGI IMG/M	906888
67770	Nonlabens ulvanivorans JCM 19296	GCA_000747685	contig		906888

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Nonlabens ulvanivorans JCM 19296
NCBI: GCA_000747685

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.60	no
125439	motility	BacteriaNetⓘ	no	60.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.90	no

Predictions from Diaspora project based on:
Nonlabens ulvanivorans strain JCM19296
PATRIC: 906888.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.59	no
125438	anaerobic	anaerobicⓘ	no	98.15	no
125438	aerobic	aerobicⓘ	yes	89.24	no
125438	spore-forming	spore-formingⓘ	no	90.28	no
125438	thermophilic	thermophileⓘ	no	96.12	no
125438	flagellated	motile2+ⓘ	no	92.50	no

External links

Culture collection no.

	Culture collection no.JCM 19296
	Linkhttp://www.jcm.riken.jp/cgi-bin/jcm/jcm_number?JCM=19296

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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