Cite this strain

(LMG 27, IAM 13943, CFBP 5506)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163051

Type strain

Culture col. no. LMG 27 IAM 13943 CFBP 5506 JCM 20994

NCBI tax ID(s) 361

Special Collections JCM

Links

Name and taxonomic classification

JCM 20994 is a mesophilic, Gram-negative bacterium that was isolated from Soil.

Gram-negative mesophilic genome sequence Bacteria

SI-ID 460

LMG 27, IAM 13943, CFBP 5506, JCM 20994

Last LPSN update 2024-12-09 10:52:36

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Agrobacterium

Full scientific name Agrobacterium Conn 1942 (Approved Lists 1980)

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.5
125439	negative	99.6

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	25	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.1
125438		95.432

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.8

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Soil	South Australia	Australia	AUS	Australia and Oceania

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	60.3	thermal denaturation, midpoint method (Tm)

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Agrobacterium tumefaciens CFBP5506	GCA_005144495	complete		358
66792	Agrobacterium tumefaciens strain CFBP5506	358.246	wgs	PATRIC	358

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Agrobacterium tumefaciens CFBP5506
NCBI: GCA_005144495

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.10	no
125439	motility	BacteriaNetⓘ	yes	69.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.80	no

Predictions from Diaspora project based on:
Agrobacterium tumefaciens strain CFBP5506
PATRIC: 358.246

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	96.21	no
125438	spore-forming	spore-formingⓘ	no	95.43	no
125438	aerobic	aerobicⓘ	yes	86.69	no
125438	thermophilic	thermophileⓘ	no	100.00	yes
125438	flagellated	motile2+ⓘ	yes	69.85	no

External links

Straininfo Link

@ref	Straininfo	Culture collections
113819	460	LMG 27, IAM 13943, CFBP 5506, JCM 20994

Culture collection no.

Culture collection no.
LMG 27
IAM 13943
CFBP 5506
JCM 20994

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#113819	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID460.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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