Cite this strain

Anaerobutyricum hallii (JCM 31263)

BacDive ID 163991

Type strain

Culture col. no. JCM 31263

NCBI tax ID(s) 39488

Special Collections JCM

Links

Anaerobutyricum hallii JCM 31263 is a mesophilic prokaryote that was isolated from Human feces.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 132902

JCM 31263

@ref 20215

Last LPSN update 2025-12-16 10:09:21

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Anaerobutyricum

Species Anaerobutyricum hallii

Full scientific name Anaerobutyricum hallii (Holdeman and Moore 1974) Shetty et al. 2018

Synonyms (1)

Eubacterium hallii

BacDive ID	Other strains from **Anaerobutyricum hallii** (1)	Type strain
5428	A. hallii DSM 3353, ATCC 27751, JCM 7789, VPI B4-27 (type strain)

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	98.8

Isolation, sampling and environmental information

Isolation

67770

Sample typeHuman feces

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1658639v1 assembly for Anaerobutyricum hallii JCM 31263	contig	GCA_016586395	39488.234	39488	25.14

Genome browser: GCA_016586395

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Anaerobutyricum hallii JCM 31263
NCBI: GCA_016586395

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	71.40	no
125439	motility	BacteriaNetⓘ	yes	75.50	no
125439	gram_stain	BacteriaNetⓘ	variable	82.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	98.80	no

Predictions from Diaspora project based on:
Anaerobutyricum hallii strain JCM 31263
PATRIC: 39488.234

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	80.47	no
125438	anaerobic	anaerobicⓘ	yes	89.44	no
125438	spore-forming	spore-formingⓘ	no	54.10	no
125438	aerobic	aerobicⓘ	no	96.61	no
125438	thermophilic	thermophileⓘ	no	95.48	no
125438	flagellated	motile2+ⓘ	no	78.36	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Characterization of fructooligosaccharide metabolism and fructooligosaccharide-degrading enzymes in human commensal butyrate producers.	Tanno H, Fujii T, Hirano K, Maeno S, Tonozuka T, Sakamoto M, Ohkuma M, Tochio T, Endo A.	Gut Microbes	10.1080/19490976.2020.1869503	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Anaerobutyricum hallii (JCM 31263)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_016586395

Genome-based predictions

Predictions

Literature

Literature

References

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