Cite this strain

Faecalimonas umbilicata (DSM 103427, JCM 31370, TSAH33)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164043

Type strain

Strain Designation TSAH33

Culture col. no. DSM 103427 JCM 31370 TSAH33

NCBI tax ID(s) 1912855

Special Collections DSMZ JCM

Links

Name and taxonomic classification

Faecalimonas umbilicata TSAH33 is a mesophilic bacterium that was isolated from Feces of a man in the forties.

mesophilic 16S sequence Bacteria

SI-ID 396619

DSM 103427

Last LPSN update 2024-12-09 10:52:43

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Faecalimonas

Species Faecalimonas umbilicata

Full scientific name Faecalimonas umbilicata Sakamoto et al. 2017

BacDive ID	Other strains from **Faecalimonas umbilicata** (3)	Type strain
140268	F. umbilicata EGH7, DSM 103426, JCM 30896 (type strain)
160749	F. umbilicata 9/1/43 B FAA, DSM 24431
164157	F. umbilicata JCM 31933

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
68996	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)		Medium recipe provided by DSMZ

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic
68996	positive	growth	37	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type
67770	Feces of a man in the forties
68996	Feces of man

Taxonmaps

69479

Global distribution of 16S sequence LC192832 (>99% sequence identity) for Faecalimonas umbilicata subclade from Microbeatlas

Aquatic Samples	856
Soil Samples	369
Animal Samples	51940
Plant Samples	294
Total Samples	53459

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
68996	1	Risk group (German classification)

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	45.5	high performance liquid chromatography (HPLC)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Faecalimonas umbilicata gene for 16S ribosomal RNA, partial sequence, strain: TSAH33	LC192832	1492		1912855

Genome-based predictions

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Faecalimonas umbilicata gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium contortum, Eubacterium fissicatena and Clostridium oroticum as Faecalicatena contorta gen. nov., comb. nov., Faecalicatena fissicatena comb. nov. and Faecalicatena orotica comb. nov.	Sakamoto M, Iino T, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001790	2017

Straininfo Link

@ref	Straininfo	Culture collections
114150	396619	DSM 103427

Culture collection no.

Culture collection no.
DSM 103427
JCM 31370
TSAH33

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68996	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103427
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#114150	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396619.1 )

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