Cite this strain

(KCTC 62307, JCM 32458)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164261

Type strain

Culture col. no. KCTC 62307 JCM 32458

Special Collections JCM KCTC

Name and taxonomic classification

JCM 32458 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from Mahananda River at Siliguri.

Gram-negative aerobe mesophilic genome sequence 16S sequence

Culture Collection Numbers

KCTC 62307 JCM 32458

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.5
125438	negative	99

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.2

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	93.875

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Mahananda River at Siliguri	West Bengal	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence MF401548 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	543
Soil Samples	368
Animal Samples	799
Plant Samples	423
Total Samples	2133

Safety information

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pseudomonas sp. MR 02 16S ribosomal RNA gene, partial sequence	MF401548	1501		2048282

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
67770	Pseudomonas sp. MR 02	GCA_002797475	scaffold		2048282

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Pseudomonas sp. MR 02
NCBI: GCA_002797475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.20	no
125439	motility	BacteriaNetⓘ	yes	89.20	no
125439	gram_stain	BacteriaNetⓘ	negative	98.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	83.80	no

Predictions from Diaspora project based on:
Pseudomonas sp. MR 02 MR 02
NCBI: GCA_002797475.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	99.66	no
125438	aerobic	aerobicⓘ	yes	93.88	no
125438	spore-forming	spore-formingⓘ	no	86.59	no
125438	thermophilic	thermophileⓘ	no	98.99	no
125438	flagellated	motile2+ⓘ	yes	87.94	no

External links

Culture collection no.

Culture collection no.
KCTC 62307
JCM 32458

References

#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

Rate our new design

Content

About us