Cite this strain

(JCM 32528)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164290

Type strain

Culture col. no. JCM 32528

NCBI tax ID(s) 1980281

Special Collections JCM

Name and taxonomic classification

JCM 32528 is an anaerobe, mesophilic bacterium that was isolated from Fecal sample of a healthy Japanese adult.

anaerobe mesophilic genome sequence Bacteria

Culture Collection Numbers

JCM 32528

Last LPSN update 2024-12-09 10:52:45

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Oscillospiraceae

Genus Pseudoflavonifractor

Full scientific name Pseudoflavonifractor Carlier et al. 2010

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	93.081
125439	anaerobe	99.8

Isolation, sampling and environmental information

Isolation

67770

Sample typeFecal sample of a healthy Japanese adult

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	56.6	genome sequence analysis

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Clostridiales bacterium Choco116	2109689.3	wgs	PATRIC	2109689
67770	Clostridiales bacterium Choco116	GCA_003202955	contig		2109689

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Clostridiales bacterium Choco116
NCBI: GCA_003202955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	81.20	no
125439	motility	BacteriaNetⓘ	no	59.20	no
125439	gram_stain	BacteriaNetⓘ	negative	87.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.80	no

Predictions from Diaspora project based on:
Clostridiales bacterium Choco116
PATRIC: 2109689.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	69.18	no
125438	anaerobic	anaerobicⓘ	yes	93.08	no
125438	spore-forming	spore-formingⓘ	no	58.87	no
125438	aerobic	aerobicⓘ	no	96.22	no
125438	thermophilic	thermophileⓘ	no	91.80	no
125438	flagellated	motile2+ⓘ	no	88.82	no

External links

Culture collection no.

	Culture collection no.JCM 32528
	Linkhttp://www.jcm.riken.jp/cgi-bin/jcm/jcm_number?JCM=32528

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

Rate our new design

Content

About us