Cite this strain

Vibrio aquaticus (MCCC 1K03516, KCTC 62617, JCM 32691)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164332

Type strain

Culture col. no. MCCC 1K03516 KCTC 62617 JCM 32691 BEI 207

NCBI tax ID(s) 2496559

Special Collections JCM KCTC Literature strains

Links

Name and taxonomic classification

Vibrio aquaticus JCM 32691 is a facultative anaerobe, mesophilic, motile bacterium that forms circular colonies and was isolated from Bottom seawater at a depth of 50.0 m in the East China Sea.

motile colony-forming facultative anaerobe mesophilic genome sequence 16S sequence Bacteria

Culture Collection Numbers

MCCC 1K03516 KCTC 62617 JCM 32691 BEI 207

Last LPSN update 2024-12-09 10:52:45

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio aquaticus

Full scientific name Vibrio aquaticus Li et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.4
125438		90.957
125438	negative	100
69504	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
69504	0.1-1.0 mm	opaque cream	circular	1.5 days	Marine agar (MA)

Culture and growth conditions

Culture medium

@ref	Name	Growth
69504	Marine agar (MA)
69504	TCBS

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	28	mesophilic
69504	positive	growth	10.0-37.0
69504	positive	optimum	28	mesophilic

Culture pH

@ref	Ability	Type	PH
69504	positive	optimum	7.0-8.0
69504	positive	growth	6.0-9.5

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69504	NaCl	positive	growth	1.0-7.0 %(w/v)
69504	NaCl	positive	optimum	2 %(w/v)

Spore formation

@ref	Spore formation	Confidence
125439		98.8
125438		92.095
69504

Enzymes

@ref	Value	Activity	Ec
69504	acid phosphatase	-	3.1.3.2
69504	alkaline phosphatase	+	3.1.3.1
69504	alpha-chymotrypsin	-	3.4.21.1
69504	alpha-fucosidase	-	3.2.1.51
69504	alpha-galactosidase	+	3.2.1.22
69504	alpha-glucosidase	-	3.2.1.20
69504	alpha-mannosidase	-	3.2.1.24
69504	arginine dihydrolase	+	3.5.3.6
69504	beta-galactosidase	-	3.2.1.23
69504	beta-glucosidase	-	3.2.1.21
69504	beta-glucuronidase	-	3.2.1.31
69504	catalase	+	1.11.1.6
69504	cystine arylamidase	-	3.4.11.3
69504	cytochrome oxidase	+	1.9.3.1
69504	esterase (C 4)	+
69504	esterase Lipase (C 8)	-
69504	leucine arylamidase	+	3.4.11.1
69504	lipase (C 14)	-
69504	N-acetyl-beta-glucosaminidase	-	3.2.1.52
69504	naphthol-AS-BI-phosphohydrolase	-
69504	trypsin	-	3.4.21.4
69504	tryptophan deaminase	+	4.1.99.1
69504	valine arylamidase	-

Metabolite production

@ref	Chebi-ID	Metabolite	Production
69504	35581 ChEBI	indole

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69504	16651 ChEBI	(S)-lactate	+	carbon source
69504	16763 ChEBI	2-oxobutanoate	+	carbon source
69504	73918 ChEBI	3-methylglucose	+	carbon source
69504	30089 ChEBI	acetate	+	carbon source
69504	13705 ChEBI	acetoacetate	+	carbon source
69504	58187 ChEBI	alginate	-	hydrolysis
69504	17925 ChEBI	alpha-D-glucose	+	carbon source
69504	27613 ChEBI	amygdalin	+	fermentation
69504	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
69504		casein	-	hydrolysis
69504	17057 ChEBI	cellobiose	+	carbon source
69504	17029 ChEBI	chitin	+	hydrolysis
69504	15824 ChEBI	D-fructose	+	carbon source
69504	78697 ChEBI	D-fructose 6-phosphate	+	carbon source
69504	28847 ChEBI	D-fucose	+	carbon source
69504	15895 ChEBI	D-galactonic acid lactone	+	carbon source
69504	12936 ChEBI	D-galactose	+	carbon source
69504	17634 ChEBI	D-glucose	+	fermentation
69504	17634 ChEBI	D-glucose	+	oxidation
69504	14314 ChEBI	D-glucose 6-phosphate	+	carbon source
69504	15748 ChEBI	D-glucuronate	+	carbon source
69504	16899 ChEBI	D-mannitol	+	carbon source
69504	16899 ChEBI	D-mannitol	+	fermentation
69504	16899 ChEBI	D-mannitol	+	oxidation
69504	16024 ChEBI	D-mannose	+	carbon source
69504	17814 ChEBI	D-salicin	+	carbon source
69504	16523 ChEBI	D-serine	+	carbon source
69504	17924 ChEBI	D-sorbitol	+	carbon source
69504	16991 ChEBI	dna	+	hydrolysis
69504	5291 ChEBI	gelatin	+	carbon source
69504	5291 ChEBI	gelatin	+	hydrolysis
69504	28066 ChEBI	gentiobiose	+	carbon source
69504	32323 ChEBI	glucuronamide	+	carbon source
69504	17754 ChEBI	glycerol	+	carbon source
69504	35581 ChEBI	indole	+
69504	17596 ChEBI	inosine	+	carbon source
69504	16977 ChEBI	L-alanine	+	carbon source
69504	16467 ChEBI	L-arginine	+	carbon source
69504	29991 ChEBI	L-aspartate	+	carbon source
69504	18287 ChEBI	L-fucose	+	carbon source
69504	17464 ChEBI	L-galactonic acid gamma-lactone	+	carbon source
69504	29985 ChEBI	L-glutamate	+	carbon source
69504	15589 ChEBI	L-malate	+	carbon source
69504	62345 ChEBI	L-rhamnose	+	carbon source
69504	17115 ChEBI	L-serine	+	carbon source
69504	17306 ChEBI	maltose	+	carbon source
69504	28053 ChEBI	melibiose	+	carbon source
69504	320055 ChEBI	methyl beta-D-glucopyranoside	+	carbon source
69504	17268 ChEBI	myo-inositol	+	carbon source
69504	63154 ChEBI	N-acetyl-beta-D-mannosamine	+	carbon source
69504	28037 ChEBI	n-acetyl-D-galactosamine	+	carbon source
69504	506227 ChEBI	N-acetyl-D-glucosamine	+	carbon source
69504		n-acetyl-neuraminic acid	+	carbon source
69504	17632 ChEBI	nitrate	+/-	reduction
69504	17309 ChEBI	pectin	+	carbon source
69504	17164 ChEBI	stachyose	+	carbon source
69504	17992 ChEBI	sucrose	+	carbon source
69504	27082 ChEBI	trehalose	+	carbon source
69504	32528 ChEBI	turanose	+	carbon source
69504	53424 ChEBI	tween 20	+	hydrolysis
69504	53423 ChEBI	tween 40	+	carbon source
69504	53423 ChEBI	tween 40	+	hydrolysis
69504	53426 ChEBI	tween 80	-	hydrolysis

Oxygen tolerance

@ref	Oxygen tolerance
69504	facultative anaerobe
125439	obligate aerobe

Isolation, sampling and environmental information

Isolation

@ref	Sample type
67770	Bottom seawater at a depth of 50.0 m in the East China Sea
69504	Sea water sample, depth 50.0m

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	45.06	genome sequence analysis

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Vibrio aquaticus strain BEI207 16S ribosomal RNA gene, partial sequence	MG754467	1542		2496559

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
67770	Vibrio aquaticus BEI207	GCA_003970385	contig		2496559
69504	genome sequence	RXZH01000000			2496559

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Vibrio aquaticus BEI207
NCBI: GCA_003970385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.80	no
125439	motility	BacteriaNetⓘ	yes	75.00	no
125439	gram_stain	BacteriaNetⓘ	negative	97.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.40	no

Predictions from Diaspora project based on:
Vibrio aquaticus BEI207
NCBI: GCA_003970385.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	96.28	no
125438	aerobic	aerobicⓘ	no	65.02	yes
125438	spore-forming	spore-formingⓘ	no	92.10	no
125438	thermophilic	thermophileⓘ	no	99.48	yes
125438	flagellated	motile2+ⓘ	yes	90.96	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio ouci sp. nov. and Vibrio aquaticus sp. nov., two marine bacteria isolated from the East China Sea.	Li B, Li Y, Liu R, Xue C, Zhu X, Tian X, Wang X, Liang J, Zheng Y, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003732	2020

Culture collection no.

Culture collection no.
MCCC 1K03516
KCTC 62617
JCM 32691
BEI 207

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69504	Hayoung Cho, Jun Heo, Moriyuki Hamada, Tomohiko Tamura, Satomi Saitou, Jeong-Seon Kim, Seung-Beom Hong, Soo-Jin Kim, Soon-Wo Kwon: Vibrio ouci sp. nov. and Vibrio aquaticus sp. nov., two marine bacteria isolated from the East China Sea. IJSEM 70: 2019 ( DOI 10.1099/ijsem.0.003732 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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