Cite this strain

Stutzerimonas urumqiensis (ACCC 60124, JCM 32830, T3)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164374

Type strain

Strain Designation T3

Culture col. no. ACCC 60124 JCM 32830 T3

NCBI tax ID(s) 638269

Special Collections JCM Literature strains

Links

Name and taxonomic classification

Stutzerimonas urumqiensis T3 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Rhizosphere soil of Alhagi sparsifolia collected from Xinjiang.

Gram-negative motile other colony-forming aerobe mesophilic genome sequence 16S sequence Bacteria

Culture Collection Numbers

ACCC 60124 JCM 32830 T3

Last LPSN update 2024-12-09 10:52:46

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Stutzerimonas

Species Stutzerimonas urumqiensis

Full scientific name Stutzerimonas urumqiensis (Zou et al. 2019) Gomila et al. 2022

Synonyms (1)

Pseudomonas urumqiensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
67888	negative	1.5-2.3 µm	0.8-1.2 µm	other
125438	negative

Colony morphology

@ref	Colony color	Colony shape	Medium used
67888	yellow	circular	LB (Luria-Bertani) agar

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	28	mesophilic
67888	positive	growth	15-42
67888	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH
67888	positive	optimum	7
67888	positive	growth	4-9

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67888	NaCl	positive	growth	1-6 %(w/v)
67888	NaCl	positive	optimum	1 %(w/v)

Enzymes

@ref	Value	Activity	Ec
67888	acid phosphatase	+	3.1.3.2
67888	alkaline phosphatase	+	3.1.3.1
67888	alpha-chymotrypsin	-	3.4.21.1
67888	alpha-fucosidase	-	3.2.1.51
67888	alpha-galactosidase	-	3.2.1.22
67888	alpha-glucosidase	+	3.2.1.20
67888	alpha-mannosidase	-	3.2.1.24
67888	beta-galactosidase	-	3.2.1.23
67888	beta-glucosidase	-	3.2.1.21
67888	beta-glucuronidase	-	3.2.1.31
67888	catalase	+	1.11.1.6
67888	cystine arylamidase	+	3.4.11.3
67888	cytochrome oxidase	+	1.9.3.1
67888	esterase (C 4)	+
67888	esterase Lipase (C 8)	+
67888	leucine arylamidase	+	3.4.11.1
67888	lipase (C 14)	-
67888	N-acetyl-beta-glucosaminidase	-	3.2.1.52
67888	naphthol-AS-BI-phosphohydrolase	+
67888	trypsin	-	3.4.21.4
67888	valine arylamidase	+

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67888	35581 ChEBI	indole

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67888	16651 ChEBI	(S)-lactate	+	carbon source
67888	64552 ChEBI	2-hydroxybutyrate	+	carbon source
67888	16763 ChEBI	2-oxobutanoate	-	carbon source
67888	16810 ChEBI	2-oxoglutarate	+	carbon source
67888	37054 ChEBI	3-hydroxybutyrate	+	carbon source
67888	73918 ChEBI	3-O-methyl-D-glucose	-	carbon source
67888	18101 ChEBI	4-hydroxyphenylacetic acid	-	carbon source
67888	355715 ChEBI	4-nitrophenyl beta-D-galactopyranoside	-	hydrolysis
67888	30089 ChEBI	acetate	+	carbon source
67888	13705 ChEBI	acetoacetate	+	carbon source
67888	17128 ChEBI	adipate	-	assimilation
67888	17925 ChEBI	alpha-D-glucose	+	carbon source
67888	36219 ChEBI	alpha-lactose	-	carbon source
67888	73706 ChEBI	bromosuccinate	+	carbon source
67888	17057 ChEBI	cellobiose	-	carbon source
67888	16947 ChEBI	citrate	-	carbon source
67888	18333 ChEBI	D-arabitol	+	carbon source
67888	29990 ChEBI	D-aspartate	-	carbon source
67888	15824 ChEBI	D-fructose	-	carbon source
67888	78697 ChEBI	D-fructose 6-phosphate	-	carbon source
67888	28847 ChEBI	D-fucose	-	carbon source
67888	12936 ChEBI	D-galactose	-	carbon source
67888	18024 ChEBI	D-galacturonic acid	-	carbon source
67888	30612 ChEBI	D-glucarate	+	carbon source
67888	8391 ChEBI	D-gluconate	+	carbon source
67888	17634 ChEBI	D-glucose	+	assimilation
67888	17634 ChEBI	D-glucose	-	builds acid from
67888	14314 ChEBI	D-glucose 6-phosphate	-	carbon source
67888	15748 ChEBI	D-glucuronate	+	carbon source
67888	15588 ChEBI	D-malate	+	carbon source
67888	16899 ChEBI	D-mannitol	-	carbon source
67888	16899 ChEBI	D-mannitol	+	assimilation
67888	16024 ChEBI	D-mannose	-	carbon source
67888	16024 ChEBI	D-mannose	+	assimilation
67888	16523 ChEBI	D-serine	-	carbon source
67888	17924 ChEBI	D-sorbitol	-	carbon source
67888	16551 ChEBI	D-trehalose	-	carbon source
67888	27689 ChEBI	decanoate	-	assimilation
67888	23652 ChEBI	dextrin	+	carbon source
67888	4853 ChEBI	esculin	+	hydrolysis
67888	15740 ChEBI	formate	-	carbon source
67888	16537 ChEBI	galactarate	+	carbon source
67888	16865 ChEBI	gamma-aminobutyric acid	-	carbon source
67888	5291 ChEBI	gelatin	-	carbon source
67888	5291 ChEBI	gelatin	-	hydrolysis
67888	28066 ChEBI	gentiobiose	-	carbon source
67888	32323 ChEBI	glucuronamide	-	carbon source
67888	17754 ChEBI	glycerol	-	carbon source
67888	70744 ChEBI	glycine-proline	-	carbon source
67888	17596 ChEBI	inosine	-	carbon source
67888	16977 ChEBI	L-alanine	-	carbon source
67888	30849 ChEBI	L-arabinose	-	assimilation
67888	16467 ChEBI	L-arginine	-	carbon source
67888	16467 ChEBI	L-arginine	-	hydrolysis
67888	29991 ChEBI	L-aspartate	-	carbon source
67888	18287 ChEBI	L-fucose	-	carbon source
67888	17464 ChEBI	L-galactonic acid gamma-lactone	+	carbon source
67888	29988 ChEBI	L-glutamate	+	carbon source
67888	15971 ChEBI	L-histidine	-	carbon source
67888	15589 ChEBI	L-malate	+	carbon source
67888	57606 ChEBI	L-pyroglutamate	-	carbon source
67888	62345 ChEBI	L-rhamnose	-	carbon source
67888	17115 ChEBI	L-serine	-	carbon source
67888	25115 ChEBI	malate	+	assimilation
67888	17306 ChEBI	maltose	+	carbon source
67888	17306 ChEBI	maltose	+	assimilation
67888	28053 ChEBI	melibiose	-	carbon source
67888	74611 ChEBI	methyl (R)-lactate	+	carbon source
67888	320055 ChEBI	methyl beta-D-glucopyranoside	-	carbon source
67888	51850 ChEBI	methyl pyruvate	-	carbon source
67888	17268 ChEBI	myo-inositol	-	carbon source
67888	63153 ChEBI	N-acetyl-D-mannosamine	-	carbon source
67888	28800 ChEBI	N-acetylgalactosamine	-	carbon source
67888	59640 ChEBI	N-acetylglucosamine	-	carbon source
67888	59640 ChEBI	N-acetylglucosamine	-	assimilation
67888	35418 ChEBI	n-acetylneuraminate	-	carbon source
67888	17632 ChEBI	nitrate	+	reduction
67888	17309 ChEBI	pectin	-	carbon source
67888	18401 ChEBI	phenylacetate	-	assimilation
67888	32032 ChEBI	potassium gluconate	+	assimilation
67888	17272 ChEBI	propionate	-	carbon source
67888	26490 ChEBI	quinate	-	carbon source
67888	16634 ChEBI	raffinose	-	carbon source
67888	17814 ChEBI	salicin	-	carbon source
67888	53258 ChEBI	sodium citrate	-	assimilation
67888	17164 ChEBI	stachyose	-	carbon source
67888	17992 ChEBI	sucrose	-	carbon source
67888	32528 ChEBI	turanose	-	carbon source
67888	53423 ChEBI	tween 40	+	carbon source
67888	16199 ChEBI	urea	-	hydrolysis

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.568

Fatty acid profile

Metadata FA analysis

@ref

67888

Fatty acid	Percentage
C18:1 w6c and/or C18:1w7c	37.7
C16:1 w6c/C16:1 w7c	28.2
C16:0	15.6
C12:0	7.8
C10:0 3OH	3
C12:0 3OH	2.6

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
67770	Rhizosphere soil of Alhagi sparsifolia collected from Xinjiang	Alhagi sparsifolia	China	CHN	Asia
67888	rhizosphere soil of Alhagi sparsifolia		China	CHN	Asia

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67888	65.3	genome sequence analysis

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67888	Stutzerimonas urumqiensis 16S ribosomal RNA gene, partial sequence	MH355542	1497		638269

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
67770	[Pseudomonas] urumqiensis T3	GCA_003640395	contig		638269

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
[Pseudomonas] urumqiensis T3
NCBI: GCA_003640395.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	yes
125438	anaerobic	anaerobicⓘ	no	95.91	no
125438	aerobic	aerobicⓘ	yes	91.57	no
125438	spore-forming	spore-formingⓘ	no	88.28	no
125438	thermophilic	thermophileⓘ	no	98.75	yes
125438	flagellated	motile2+ⓘ	yes	87.93	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas urumqiensis sp. nov., isolated from rhizosphere soil of Alhagi sparsifolia.	Zou Y, He S, Sun Y, Zhang X, Liu Y, Cheng Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.003390	2019

Culture collection no.

Culture collection no.
ACCC 60124
JCM 32830
T3

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67888	Yuanyuan Zou, Shanwen He, Yuping Sun, Xiaoxia Zhang, Yang Liu, Qi Cheng: Pseudomonas urumqiensis sp. nov., isolated from rhizosphere soil of Alhagi sparsifolia. IJSEM 69: 1760 - 1766 2019 ( DOI 10.1099/ijsem.0.003390 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

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Stutzerimonas urumqiensis (ACCC 60124, JCM 32830, T3)