Cite this strain

Lacticaseibacillus suibinensis (NCIMB 15176, JCM 33275)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164496

Type strain

Culture col. no. NCIMB 15176 JCM 33275

NCBI tax ID(s) 2486011

Special Collections JCM

Links

Name and taxonomic classification

Lacticaseibacillus suibinensis JCM 33275 is a mesophilic bacterium that was isolated from Traditional pickle in Heilongjiang Province.

mesophilic genome sequence 16S sequence Bacteria

Culture Collection Numbers

NCIMB 15176 JCM 33275

Last LPSN update 2024-12-09 10:52:46

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lacticaseibacillus

Species Lacticaseibacillus suibinensis

Full scientific name Lacticaseibacillus suibinensis (Long et al. 2020) Zheng et al. 2020

Synonyms (1)

Lactobacillus suibinensis

Morphology

Cell morphology

@ref	Motility	Confidence
125438		91
125438		94.905

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		98

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Traditional pickle in Heilongjiang Province	China	CHN	Asia

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	53	genome sequence analysis

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Lacticaseibacillus suibinensis strain 247-3 16S ribosomal RNA gene, partial sequence	MK110834	1441		2486011

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
67770	Lacticaseibacillus suibinensis 247-3	GCA_003946175	contig		2486011

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Lacticaseibacillus suibinensis 247-3
NCBI: GCA_003946175

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.00	no
125439	motility	BacteriaNetⓘ	no	65.50	no
125439	gram_stain	BacteriaNetⓘ	negative	69.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	85.70	no

Predictions from Diaspora project based on:
Lacticaseibacillus suibinensis 247-3
NCBI: GCA_003946175.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	94.91	no
125438	anaerobic	anaerobicⓘ	no	85.45	no
125438	aerobic	aerobicⓘ	no	95.73	no
125438	spore-forming	spore-formingⓘ	no	81.45	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	flagellated	motile2+ⓘ	no	91.00	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus hegangensis sp. nov., Lactobacillus suibinensis sp. nov., Lactobacillus daqingensis sp. nov., Lactobacillus yichunensis sp. nov., Lactobacillus mulanensis sp. nov., Lactobacillus achengensis sp. nov., Lactobacillus wuchangensis sp. nov., Lactobacillus gannanensis sp. nov., Lactobacillus binensis sp. nov. and Lactobacillus angrenensis sp. nov., isolated from Chinese traditional pickle and yogurt.	Long GY, Wei YX, Tu W, Gu CT	Int J Syst Evol Microbiol	10.1099/ijsem.0.004060	2020

Culture collection no.

Culture collection no.
NCIMB 15176
JCM 33275

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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