Cite this strain

Mucilaginibacter agri (KACC 21228, JCM 33472)

BacDive ID 164572

Type strain

Culture col. no. KACC 21228 JCM 33472

NCBI tax ID(s) 2695265

Special Collections JCM

Links

Mucilaginibacter agri JCM 33472 is a mesophilic prokaryote that was isolated from Soil in the Republic of Korea.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133664

JCM 33472

@ref 20215

Last LPSN update 2025-12-16 10:09:29

Domain Pseudomonadati

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Mucilaginibacter

Species Mucilaginibacter agri

Full scientific name Mucilaginibacter agri Seo et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.4
125438	negative	95.696

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.4

Spore formation

@ref	Spore formation	Confidence
125439		98.9

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation

67770

Sample typeSoil in the Republic of Korea

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM992868v1 assembly for Mucilaginibacter agri R11	contig	GCA_009928685	2695265.3	2898411618	2695265	69.6

Genome browser: GCA_009928685

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Mucilaginibacter agri strain R11 16S ribosomal RNA gene, partial sequence	MN080907	1444		1882438

GC content

@ref	GC-content (mol%)	Method
67770	42.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Mucilaginibacter agri R11
NCBI: GCA_009928685

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.90	no
125439	motility	BacteriaNetⓘ	no	63.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.40	no

Predictions from Diaspora project based on:
Mucilaginibacter agri R11
NCBI: GCA_009928685.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.70	no
125438	anaerobic	anaerobicⓘ	no	97.59	no
125438	aerobic	aerobicⓘ	yes	83.83	no
125438	spore-forming	spore-formingⓘ	no	86.48	no
125438	thermophilic	thermophileⓘ	no	97.63	no
125438	flagellated	motile2+ⓘ	no	86.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter agri sp. nov. and Mucilaginibacter humi sp. nov., isolated from soil.	Seo YL, Khan SA, Kim HM, Chun BH, Han DM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.004321	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mucilaginibacter agri (KACC 21228, JCM 33472)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009928685

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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