Cite this strain

Tessaracoccus coleopterorum (KCTC 49324, KACC 21348, JCM 33674)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164629

Type strain

Culture col. no. KCTC 49324 KACC 21348 JCM 33674

NCBI tax ID(s) 2714950

Special Collections JCM KCTC

Links

Name and taxonomic classification

Tessaracoccus coleopterorum JCM 33674 is a mesophilic bacterium that was isolated from Intestine of the dark diving beetle Hydrophilus acuminatus from the Geumgang river in South Korea.

mesophilic genome sequence 16S sequence Bacteria

Culture Collection Numbers

KCTC 49324 KACC 21348 JCM 33674

Last LPSN update 2024-12-09 10:52:47

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Propionibacteriaceae

Genus Tessaracoccus

Species Tessaracoccus coleopterorum

Full scientific name Tessaracoccus coleopterorum Hyun et al. 2021

Morphology

Cell morphology

@ref	Motility	Confidence
125438		95
125439		99.7

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Observation

67770

Observationquinones: MK-9(H₄)

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.6

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species
67770	Intestine of the dark diving beetle Hydrophilus acuminatus from the Geumgang river in South Korea	Hydrophilus acuminatus

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	69	genome sequence analysis

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Tessaracoccus coleopterorum strain HDW20 16S ribosomal RNA gene, partial sequence	MN099423	1442		2714950

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
67770	Tessaracoccus coleopterorum HDW20	GCA_011174705	contig		2714950

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Tessaracoccus coleopterorum HDW20
NCBI: GCA_011174705

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	66.40	no
125439	motility	BacteriaNetⓘ	no	85.20	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.60	no

Predictions from Diaspora project based on:
Tessaracoccus coleopterorum HDW20
NCBI: GCA_011174705.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.89	no
125438	anaerobic	anaerobicⓘ	no	75.51	no
125438	aerobic	aerobicⓘ	yes	54.19	no
125438	spore-forming	spore-formingⓘ	no	75.83	no
125438	thermophilic	thermophileⓘ	no	95.41	yes
125438	flagellated	motile2+ⓘ	no	95.00	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tessaracoccus coleopterorum sp. nov., isolated from the intestine of the dark diving beetle, Hydrophilus acuminatus.	Hyun DW, Sung H, Kim PS, Lee JY, Jeong YS, Yun JH, Choi JW, Han JE, Lee SY, Tak EJ, Lee JY, Kim HS, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.004588	2020

Culture collection no.

Culture collection no.
KCTC 49324
KACC 21348
JCM 33674

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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