Cite this strain

(JCM 4242)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164957

Type strain

Culture col. no. JCM 4242

NCBI tax ID(s) 2816232

Special Collections JCM

Name and taxonomic classification

JCM 4242 is an aerobe, spore-forming, mesophilic prokaryote of the family Not assigned to family.

spore-forming aerobe mesophilic genome sequence

Culture Collection Numbers

JCM 4242

Morphology

Cell morphology

@ref	Motility	Confidence
125438		91.5
125439		99.9
125439		92.2

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		91.591
125439		95

Compound production

67770

CompoundTriculamin

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.218
125439	obligate aerobe	99.3

Isolation, sampling and environmental information

Safety information

Sequence information

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Streptomyces triculaminicus JCM 4242	GCA_017349075	contig		2816232
66792	Streptomyces triculaminicus strain JCM 4242	2816232.3	wgs	PATRIC	2816232

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Streptomyces triculaminicus JCM 4242
NCBI: GCA_017349075

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	95.00	no
125439	motility	BacteriaNetⓘ	no	92.20	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Predictions from Diaspora project based on:
Streptomyces triculaminicus strain JCM 4242
PATRIC: 2816232.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.58	no
125438	anaerobic	anaerobicⓘ	no	96.89	no
125438	spore-forming	spore-formingⓘ	yes	91.59	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	aerobic	aerobicⓘ	yes	90.22	no
125438	flagellated	motile2+ⓘ	no	91.50	no

External links

Culture collection no.

	Culture collection no.JCM 4242
	Linkhttp://www.jcm.riken.jp/cgi-bin/jcm/jcm_number?JCM=4242

References

#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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