Cite this strain

Brevibacillus brevis (JCM 6285, NBRC 100599)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 165384

Type strain

Culture col. no. JCM 6285 NBRC 100599

NCBI tax ID(s) 358681 1393

Special Collections JCM

Links

Name and taxonomic classification

Brevibacillus brevis JCM 6285 is a spore-forming, mesophilic bacterium that was isolated from Soil.

spore-forming mesophilic genome sequence 16S sequence Bacteria

SI-ID 64856

JCM 6285, NBRC 100599

Last LPSN update 2024-12-09 10:52:52

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Brevibacillus

Species Brevibacillus brevis

Full scientific name Brevibacillus brevis (Migula 1900) Shida et al. 1996

Synonyms (1)

Bacillus brevis

BacDive ID	Other strains from **Brevibacillus brevis** (16)	Type strain
11402	B. brevis 27B, 604, DSM 30, ATCC 8246, CCM 2050, JCM ... (type strain)
11403	B. brevis DSM 5609, NRS 782
11404	B. brevis DSM 5667, NRS 1127
11405	B. brevis 7-2, DSM 6455, NRS 1434
100618	B. brevis STI05066(IMET),
134880	B. brevis CIP 102675
135841	B. brevis CIP 52.87, NRRL NRS-611, NRRL: NRS-611
137209	B. brevis CIP A32
144949	B. brevis CCUG 27247
160847	B. brevis JCM 10041
160848	B. brevis JCM 10042
160992	B. brevis JCM 10548
164085	B. brevis JCM 31516
164086	B. brevis JCM 31517
164087	B. brevis JCM 31518
165982	B. brevis JCM 8970

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		93.4

Isolation, sampling and environmental information

Isolation

67770

Sample typeSoil

Safety information

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	47.2	high performance liquid chromatography (HPLC)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Brevibacillus brevis gene for 16S rRNA, partial sequence, strain: NBRC 100599.	AB681205	1461		1393

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Brevibacillus brevis NBRC 100599	GCA_000010165	complete		358681
66792	Brevibacillus brevis NBRC 100599	358681.3	complete	PATRIC	358681
66792	Brevibacillus brevis NBRC 100599	643692011	complete	JGI IMG/M	358681

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Brevibacillus brevis NBRC 100599
NCBI: GCA_000010165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	93.40	no
125439	motility	BacteriaNetⓘ	yes	87.90	no
125439	gram_stain	BacteriaNetⓘ	variable	82.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	84.20	no

Predictions from Diaspora project based on:
Brevibacillus brevis NBRC 100599 NBRC 100599 (= 47)
NCBI: GCA_000010165.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	56.48	no
125438	anaerobic	anaerobicⓘ	no	96.82	no
125438	aerobic	aerobicⓘ	yes	77.84	no
125438	spore-forming	spore-formingⓘ	yes	88.72	no
125438	thermophilic	thermophileⓘ	no	93.18	yes
125438	flagellated	motile2+ⓘ	yes	86.48	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Biocontrol Bacterium Brevibacillus brevis Strain FJAT-0809-GLX.	Che J, Liu B, Lin Y, Tang W, Tang J	Genome Announc	10.1128/genomeA.00160-13	2013

Straininfo Link

@ref	Straininfo	Culture collections
114450	64856	JCM 6285, NBRC 100599

Culture collection no.

Culture collection no.
JCM 6285
NBRC 100599

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#114450	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID64856.1 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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