Cite this strain

Mycobacterium attenuatum (CCUG 72127, DSM 107153, MK41)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 166496

Type strain

Strain Designation MK41

Culture col. no. CCUG 72127 DSM 107153 MK41

NCBI tax ID(s) 2341086

Special Collections DSMZ CCUG Literature strains

Links

Name and taxonomic classification

Mycobacterium attenuatum MK41 is a mesophilic bacterium that was isolated from bronchial secretions of a patient known for Still's disease.

mesophilic genome sequence 16S sequence Bacteria

SI-ID 403977

DSM 107153

Last LPSN update 2024-12-09 10:52:59

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium attenuatum

Full scientific name Mycobacterium attenuatum Tagini et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	94.7

Colony morphology

@ref	Colony color	Incubation period	Medium used
67931	beige	14 days	7H10

Pigmentation

@ref	Production	Name
67931		Phptochrome

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
69047	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe provided by DSMZ

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67931	positive	optimum	37	mesophilic
67931	negative	growth	25
67931	negative	growth	45
69047	positive	growth	37	mesophilic

Physiology and metabolism

Enzymes

@ref	Value	Activity	Ec
67931	arylsulfatase	-	3.1.6.1
67931	catalase	+	1.11.1.6
67931	nitrate reductase	+	1.7.99.4
67931	urease	+	3.5.1.5

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67931	75248 ChEBI	potassium tellurite	-	reduction
67931	53426 ChEBI	tween 80	+	hydrolysis

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.3

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67931	bronchial secretions (aspiration of bronchial secretions) of a patient known for Still's disease	Lausanne University Hospital	Switzerland	CHE	Europe
69047	Bronchial aspiration (Human)	Lausanne	Switzerland	CHE	Europe

Taxonmaps

69479

Global distribution of 16S sequence LS999934 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	382
Soil Samples	881
Animal Samples	203
Plant Samples	54
Total Samples	1520

Safety information

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67931	Mycobacterium sp. MK41 partial 16S rRNA gene, strain MK41 = CCUG 72127 = DSM 107153, isolate MK41, clone MK41	LS999934	1525		2341086

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Mycobacterium attenuatum MK41	GCA_900566085	contig		2341086
66792	Mycobacterium attenuatum MK41	2868392912	draft	JGI IMG/M	2341086

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Mycobacterium attenuatum MK41
NCBI: GCA_900566085

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	67.20	no
125439	motility	BacteriaNetⓘ	no	88.50	no
125439	gram_stain	BacteriaNetⓘ	positive	94.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.30	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.	Tagini F, Aeby S, Bertelli C, Droz S, Casanova C, Prod'hom G, Jaton K, Greub G	Int J Syst Evol Microbiol	10.1099/ijsem.0.003378	2019

Straininfo Link

@ref	Straininfo	Culture collections
114801	403977	DSM 107153

Culture collection no.

Culture collection no.
CCUG 72127
DSM 107153
MK41

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67931	Florian Tagini, Sébastien Aeby, Claire Bertelli, Sara Droz, Carlo Casanova, Guy Prod'hom, Katia Jaton, Gilbert Greub: Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.. IJSEM 69: 1696 - 1704 2019 ( DOI 10.1099/ijsem.0.003378 )
#69047	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107153
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#114801	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403977.1 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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