Cite this strain

Haladaptatus halobius (CGMCC 1.16851, PSR5, JCM 34141)

BacDive ID 170242

Type strain

Strain Designation PSR5

Culture col. no. CGMCC 1.16851 PSR5 JCM 34141

NCBI tax ID(s) 2884875

Special Collections JCM

Links

Haladaptatus halobius PSR5 is a prokaryote of the family Halobacteriaceae.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133314

JCM 34141

@ref 20215

Last LPSN update 2025-12-16 10:10:46

Domain Methanobacteriati

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Halobacteriaceae

Genus Haladaptatus

Species Haladaptatus halobius

Full scientific name Haladaptatus halobius Xin et al. 2022

Morphology

Culture and growth conditions

Physiology and metabolism

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2061847v1 assembly for Haladaptatus halobius PSR5	complete	GCA_020618475	2884875.3	8064847573	2884875	93.44

Genome browser: GCA_020618475

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Haladaptatus halobius strain PSR5 16S ribosomal RNA gene, partial sequence	MK640680	1472		2884875

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Haladaptatus halobius PSR5
NCBI: GCA_020618475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	89.30	no
125439	motility	BacteriaNetⓘ	no	55.30	no
125439	gram_stain	BacteriaNetⓘ	negative	75.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	74.10	no

Predictions from Diaspora project based on:
Haladaptatus halobius PSR5
NCBI: GCA_020618475.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	73.88	no
125438	anaerobic	anaerobicⓘ	no	83.04	no
125438	aerobic	aerobicⓘ	yes	82.76	no
125438	spore-forming	spore-formingⓘ	no	77.04	no
125438	thermophilic	thermophileⓘ	no	75.32	no
125438	flagellated	motile2+ⓘ	no	87.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haladaptatus halobius sp. nov. and Haladaptatus salinisoli sp. nov., two extremely halophilic archaea isolated from Gobi saline soil.	Xin YJ, Bao CX, Tan S, Hou J, Cui HL	Int J Syst Evol Microbiol	10.1099/ijsem.0.005543	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haladaptatus halobius (CGMCC 1.16851, PSR5, JCM 34141)

Name and taxonomic classification

Morphology

Culture and growth conditions

Physiology and metabolism

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_020618475

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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