Cite this strain

Xanthomonas euvesicatoria (DSM 19128, ATCC 11633, LMG 27970)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17613

Type strain

Culture col. no. DSM 19128 ATCC 11633 LMG 27970 NCPPB 2968

NCBI tax ID(s) 456327

Special Collections DSMZ

Links

Name and taxonomic classification

Xanthomonas euvesicatoria DSM 19128 is a mesophilic, Gram-negative plant pathogen that was isolated from Capsicum frutescens.

Gram-negative mesophilic plant pathogen genome sequence 16S sequence Bacteria

SI-ID 35399

ATCC 11633, ICMP 98, ICMP 109, NCPPB 2968, DSM 19128, CFBP 6864, LMG 27970

Last LPSN update 2024-12-09 10:45:03

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Xanthomonas

Species Xanthomonas euvesicatoria

Full scientific name Xanthomonas euvesicatoria Jones et al. 2006

Synonyms (2)

Xanthomonas alfalfae
Xanthomonas perforans

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98
125439	negative	96.6

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7926	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7926	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		95.3

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
7926	Capsicum frutescens	Capsicum frutescens	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence FR733718 (>99% sequence identity) for Xanthomonas from Microbeatlas

Aquatic Samples	6826
Soil Samples	10026
Animal Samples	28252
Plant Samples	7048
Total Samples	52152

Safety information

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
7926		1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Xanthomonas euvesicatoria strain XV 25 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ala and tRNA-Ile genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	KF876018	1046		456327
20218	Xanthomonas euvesicatoria partial 16S rRNA gene, type strain DSM19128T	FR733718	1535		456327

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Xanthomonas euvesicatoria LMG 27970	GCA_001401555	contig		456327
66792	Xanthomonas euvesicatoria strain LMG 27970	456327.28	wgs	PATRIC	456327
66792	Xanthomonas euvesicatoria LMG 27970	2645727737	draft	JGI IMG/M	456327
66792	Xanthomonas euvesicatoria pv. euvesicatoria ATCC 11633	GCA_020880415	contig		2753541

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Xanthomonas euvesicatoria LMG 27970
NCBI: GCA_001401555

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.30	no
125439	motility	BacteriaNetⓘ	yes	72.70	no
125439	gram_stain	BacteriaNetⓘ	negative	96.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from Diaspora project based on:
Xanthomonas euvesicatoria strain LMG 27970
PATRIC: 456327.28

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	97.84	no
125438	spore-forming	spore-formingⓘ	no	89.27	no
125438	aerobic	aerobicⓘ	yes	88.08	no
125438	thermophilic	thermophileⓘ	no	99.91	no
125438	flagellated	motile2+ⓘ	yes	70.71	no

External links

Literature

Title	Authors	Journal	DOI	Year
A New Type of Strain of Xanthomonas euvesicatoria Causing Bacterial Spot of Tomato and Pepper in Grenada.	Hamza AA, Robene-Soustrade I, Boyer C, Laurent A, Jouen E, Wicker E, Prior P, Pruvost O, Dottin M	Plant Dis	10.1094/PDIS-05-10-0397	2010

Straininfo Link

@ref	Straininfo	Culture collections
86606	35399	ATCC 11633, ICMP 98, ICMP 109, NCPPB 2968, DSM 19128, CFBP 6864, LMG 27970

Culture collection no.

Culture collection no.
DSM 19128
ATCC 11633
LMG 27970
NCPPB 2968

References

#7926	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19128
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#86606	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID35399.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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