Cite this strain

Microbacterium lacus (DSM 26765, SDZ, SDZm4)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23102

Type strain

Strain Designation SDZ, SDZm4

Culture col. no. DSM 26765 SDZ SDZm4

NCBI tax ID(s) 415217

Special Collections DSMZ

Links

Name and taxonomic classification

Microbacterium lacus SDZ is a mesophilic bacterium that was isolated from typic Hapludalf soil.

mesophilic genome sequence Bacteria

SI-ID 397793

DSM 26765

Last LPSN update 2024-12-09 10:45:40

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium lacus

Full scientific name Microbacterium lacus Kageyama et al. 2008

BacDive ID	Other strains from **Microbacterium lacus** (1)	Type strain
7437	M. lacus A5E-52, DSM 18910, JCM 15575, MBIC 08279, ... (type strain)

Morphology

Cell morphology

@ref	Motility	Confidence
125438		92.875
125438		90.45
125439		95.1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19076	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
19076	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
19076	typic Hapludalf soil	Germany	DEU	Europe

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
19076	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Microbacterium lacus SDZm4	GCA_002812805	contig		415217
66792	Microbacterium lacus strain SDZm4	415217.3	wgs	PATRIC	415217

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Microbacterium lacus SDZm4
NCBI: GCA_002812805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	74.90	no
125439	motility	BacteriaNetⓘ	no	75.70	no
125439	gram_stain	BacteriaNetⓘ	positive	95.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.70	no

Predictions from Diaspora project based on:
Microbacterium lacus strain SDZm4
PATRIC: 415217.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.45	no
125438	anaerobic	anaerobicⓘ	no	97.92	no
125438	spore-forming	spore-formingⓘ	no	74.70	no
125438	aerobic	aerobicⓘ	yes	85.15	no
125438	thermophilic	thermophileⓘ	no	96.43	yes
125438	flagellated	motile2+ⓘ	no	92.88	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	A novel isolated Terrabacter-like bacterium can mineralize 2-aminopyrimidine, the principal metabolite of microbial sulfadiazine degradation.	Tappe W, Hofmann D, Disko U, Koeppchen S, Kummer S, Vereecken H	Biodegradation	10.1007/s10532-015-9722-9	2015
Metabolism	Degradation of sulfadiazine by Microbacterium lacus strain SDZm4, isolated from lysimeters previously manured with slurry from sulfadiazine-medicated pigs.	Tappe W, Herbst M, Hofmann D, Koeppchen S, Kummer S, Thiele B, Groeneweg J	Appl Environ Microbiol	10.1128/AEM.03636-12	2013

Straininfo Link

@ref	Straininfo	Culture collections
87339	397793	DSM 26765

Culture collection no.

Culture collection no.
DSM 26765
SDZ
SDZm4

References

#19076	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26765
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#87339	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397793.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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