Cite this strain

(DSM 11700, ATCC BAA-1142, EE-36)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23229

Type strain

Strain Designation EE-36

Culture col. no. DSM 11700 ATCC BAA-1142 EE-36

NCBI tax ID(s) 1903071

Special Collections DSMZ

Links

Name and taxonomic classification

EE-36 is a mesophilic, Gram-negative bacterium that was isolated from salt marsh.

Gram-negative mesophilic genome sequence 16S sequence Bacteria

SI-ID 298253

ATCC BAA-1142

Last LPSN update 2024-12-09 10:45:41

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Sulfitobacter

Full scientific name Sulfitobacter Sorokin 1996

Synonyms (3)

Oceanibulbus
Parasulfitobacter
Staleya

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	95.9
125438	negative	98

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18936	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
18936	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		92.8

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	92.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Salt marsh
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
18936	salt marsh	Georgia	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AF007254 (>99% sequence identity) for Sulfitobacter pontiacus from Microbeatlas

Aquatic Samples	1830
Soil Samples	26
Animal Samples	141
Plant Samples	4
Total Samples	2001

Safety information

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18936	Sulfitobacter sp. EE-36 16S ribosomal RNA gene, partial sequence	AF007254	1376		52598

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Sulfitobacter sp. EE-36	GCA_000152605	scaffold		52598
66792	Sulfitobacter sp. EE-36	52598.8	wgs	PATRIC	52598
66792	Sulfitobacter sp. EE-36	638341211	draft	JGI IMG/M	52598

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Sulfitobacter sp. EE-36
NCBI: GCA_000152605

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	92.80	no
125439	motility	BacteriaNetⓘ	yes	71.50	no
125439	gram_stain	BacteriaNetⓘ	negative	95.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.50	no

Predictions from Diaspora project based on:
Sulfitobacter sp. EE-36 EE-36
NCBI: GCA_000152605.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	97.36	no
125438	aerobic	aerobicⓘ	yes	83.31	no
125438	spore-forming	spore-formingⓘ	no	88.49	no
125438	thermophilic	thermophileⓘ	no	96.72	no
125438	flagellated	motile2+ⓘ	no	54.30	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequences of two novel phages infecting marine roseobacters.	Zhao Y, Wang K, Jiao N, Chen F	Environ Microbiol	10.1111/j.1462-2920.2009.01927.x	2009

Straininfo Link

@ref	Straininfo	Culture collections
87455	298253	ATCC BAA-1142

Culture collection no.

Culture collection no.
DSM 11700
ATCC BAA-1142
EE-36

References

#18936	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11700
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#87455	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID298253.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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