Cite this strain

Chlamydia psittaci (DSM 27008, 01DE0183, DC15)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23839

Type strain

Strain Designation 01DE0183, DC15, 02DC15

Culture col. no. DSM 27008 01DE0183 DC15 02DC15

NCBI tax ID(s) 83554

Special Collections DSMZ

Links

Name and taxonomic classification

Chlamydia psittaci 01DE0183 is a mesophilic bacterium that was isolated from aborted calf fetus.

mesophilic genome sequence 16S sequence Bacteria

SI-ID 397161

DSM 27008

Last LPSN update 2024-12-09 10:45:44

Domain Bacteria

Phylum Chlamydiota

Class Chlamydiia

Order Chlamydiales

Family Chlamydiaceae

Genus Chlamydia

Species Chlamydia psittaci

Full scientific name Chlamydia psittaci (Lillie 1930) Page 1968 (Approved Lists 1980)

Synonyms (2)

Chlamydophila psittaci
"Rickettsia psittaci"

BacDive ID	Other strains from **Chlamydia psittaci** (2)	Type strain
167826	C. psittaci 6BC, Psittacosis strain 6 BC, ATCC VR-125 (type strain)
23838	C. psittaci 07DE0014, DC60, 08DC60, DSM 27007

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.8

Colony morphology

21076

Incubation period3-7 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21076	CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193)		Medium recipe at MediaDive	Name: CULTIVATION MEDIUM FOR CHLAMYDIAE (DSMZ Medium 1193) Composition: Aminoacids Fetal bovine serum IMDM-Medium

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21076	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		93.849
125439		99.9

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Urogenital tract	#Abort
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host	#Juvenile	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21076	aborted calf fetus	Saxony Anhalt, Stendal	Germany	DEU	Europe

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
21076	2	Risk group (German classification)

Sequence information

GC content

21076

GC-content (mol%)39.1

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21076	Chlamydia psittaci 02DC15, complete sequence	NC_017292.1	1172182		1112254

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Chlamydia psittaci 02DC15	GCA_000270425	complete		1112254
66792	Chlamydia psittaci 02DC15	GCA_000415545	scaffold		1112254
66792	Chlamydia psittaci 02DC15	1112254.4	wgs	PATRIC	1112254
66792	Chlamydia psittaci 02DC15	1112254.5	complete	PATRIC	1112254
66792	Chlamydia psittaci 02DC15	651053013	complete	JGI IMG/M	1112254
66792	Chlamydia psittaci 02DC15	2541047491	draft	JGI IMG/M	1112254

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Chlamydia psittaci 02DC15
NCBI: GCA_000270425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	motility	BacteriaNetⓘ	yes	74.30	no
125439	spore_formation	BacteriaNetⓘ	no	99.90	no

Predictions from Diaspora project based on:
Chlamydia psittaci 02DC15 02DC15
NCBI: GCA_000270425.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	84.06	no
125438	anaerobic	anaerobicⓘ	no	65.20	no
125438	aerobic	aerobicⓘ	no	80.16	no
125438	spore-forming	spore-formingⓘ	no	93.85	no
125438	thermophilic	thermophileⓘ	no	94.36	yes
125438	flagellated	motile2+ⓘ	no	72.91	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Development of a Plasmid Shuttle Vector System for Genetic Manipulation of Chlamydia psittaci.	Shima K, Weber MM, Schnee C, Sachse K, Kading N, Klinger M, Rupp J	mSphere	10.1128/mSphere.00787-20	2020
	Identification of in vivo-induced bacterial protein antigens during calf infection with Chlamydia psittaci.	Kastner J, Saluz HP, Hanel F	Int J Med Microbiol	10.1016/j.ijmm.2014.12.022	2014
Genetics	Complete genome sequences of four mammalian isolates of Chlamydophila psittaci.	Schofl G, Voigt A, Litsche K, Sachse K, Saluz HP	J Bacteriol	10.1128/JB.05382-11	2011

Straininfo Link

@ref	Straininfo	Culture collections
87861	397161	DSM 27008

Culture collection no.

Culture collection no.
DSM 27008
01DE0183
DC15
02DC15

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21076	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27008
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#87861	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397161.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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