Cite this strain

Albidiferax ferrireducens (DSM 15236, ATCC BAA-621, T118)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3028

Type strain

Strain Designation T118

Culture col. no. DSM 15236 ATCC BAA-621 T118

NCBI tax ID(s) 192843

Special Collections DSMZ

Links

Name and taxonomic classification

Albidiferax ferrireducens T118 is a mesophilic, Gram-negative bacterium that was isolated from coastal aquifer sediment.

Gram-negative mesophilic genome sequence 16S sequence Bacteria

SI-ID 100908

ATCC BAA-621, DSM 15236

Last LPSN update 2024-12-09 10:43:28

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Albidiferax

Species Albidiferax ferrireducens

Full scientific name Albidiferax ferrireducens corrig. (Finneran et al. 2003) Ramana and Sasikala 2009

Synonyms (2)

Rhodoferax ferrireducens
Albidoferax ferrireducens

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5775	BASAL MEDIUM (DSMZ Medium 1001)		Medium recipe at MediaDive	Name: BASAL MEDIUM (DSMZ Medium 1001) Composition: NaHCO3 2.5 g/l NaH2PO4 x H2O 0.6 g/l NH4Cl 0.25 g/l KCl 0.1 g/l MgSO4 0.03 g/l NTA 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l ZnCl2 0.0013 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l CoCl2 x 6 H2O 0.001 g/l Na2MoO4 0.00025 g/l Na2WO4 x 2 H2O 0.00025 g/l NiCl2 x 6 H2O 0.00024 g/l H3BO3 0.0001 g/l AlK(SO4)2 x 12 H2O 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l Pyridoxine hydrochloride 0.0001 g/l p-Aminobenzoic acid 5e-05 g/l Thioctic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine 5e-05 g/l Nicotinic acid 5e-05 g/l Pantothenic acid 5e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l Vitamin B12 1e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5775	positive	growth	25	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5775	coastal aquifer sediment	VA, Oyster Bay	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AF435948 (>99% sequence identity) for Rhodoferax ferrireducens subclade from Microbeatlas

Aquatic Samples	16
Soil Samples
Animal Samples	1
Plant Samples	1
Total Samples	18

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
5775	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5775	Rhodoferax ferrireducens 16S ribosomal RNA gene, partial sequence	AF435948	1470		338969

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Rhodoferax ferrireducens T118 DSM 15236	GCA_000013605	complete		338969
66792	Rhodoferax ferrireducens T118 strain DSM 15236	338969.25	plasmid	PATRIC	338969

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Rhodoferax ferrireducens T118 DSM 15236
NCBI: GCA_000013605.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	83.15	no
125438	aerobic	aerobicⓘ	yes	68.11	no
125438	spore-forming	spore-formingⓘ	no	89.63	no
125438	thermophilic	thermophileⓘ	no	94.96	yes
125438	flagellated	motile2+ⓘ	yes	85.89	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodoferax koreense sp. nov, an obligately aerobic bacterium within the family Comamonadaceae, and emended description of the genus Rhodoferax.	Farh ME, Kim YJ, Singh P, Jung SY, Kang JP, Yang DC	J Microbiol	10.1007/s12275-017-7033-z	2017
Phylogeny	Rhodoferax ferrireducens sp. nov., a psychrotolerant, facultatively anaerobic bacterium that oxidizes acetate with the reduction of Fe(III).	Finneran KT, Johnsen CV, Lovley DR	Int J Syst Evol Microbiol	10.1099/ijs.0.02298-0	2003

Straininfo Link

@ref	Straininfo	Culture collections
72548	100908	ATCC BAA-621, DSM 15236

Culture collection no.

Culture collection no.
DSM 15236
ATCC BAA-621
T118

References

#5775	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15236
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#72548	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100908.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

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