Cite this strain

Fibrisoma limi (DSM 22564, CCUG 58137, BUZ 3)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3836

Type strain

Culture col. no. DSM 22564 CCUG 58137 BUZ 3

NCBI tax ID(s) 1185876 663275

Special Collections DSMZ CCUG

Links

Name and taxonomic classification

Fibrisoma limi DSM 22564 is an aerobe, mesophilic bacterium that was isolated from mud from tidal flats.

aerobe mesophilic 16S sequence Bacteria

SI-ID 406396

DSM 22564, CCUG 58137

Last LPSN update 2024-12-09 10:43:33

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Spirosomataceae

Genus Fibrisoma

Species Fibrisoma limi

Full scientific name Fibrisoma limi Filippini et al. 2011

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16402	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16402	positive	growth	28	mesophilic
61605	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

61605

Oxygen toleranceaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Tidal flat

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
16402	mud from tidal flats	North Sea coast, Fedderwardersiel (53° 35' 59'' N, 8° 21' 23'' E, elevation 0 m)	Germany	DEU	Europe	53.5997	8.3564 53.5997/8.3564
61605	Mud,tidal flats	North Sea coast,Fedderwardersiel	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence GQ355622 (>99% sequence identity) for Fibrisoma limi subclade from Microbeatlas

Aquatic Samples	504
Soil Samples	241
Animal Samples	2501
Plant Samples	79
Total Samples	3325

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
16402	1	Risk group (German classification) According to TRBA 466

Sequence information

GC content

@ref	GC-content (mol%)	Method
16402	52.0	high performance liquid chromatography (HPLC)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16402	Fibrisoma limi strain BUZ 3 16S ribosomal RNA gene, partial sequence	GQ355622	1430		1185876

Genome-based predictions

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence of the filamentous bacterium Fibrisoma limi BUZ 3T.	Filippini M, Qi W, Jaenicke S, Goesmann A, Smits TH, Bagheri HC	J Bacteriol	10.1128/JB.00869-12	2012
	Antagonistic interactions between filamentous heterotrophs and the cyanobacterium Nostoc muscorum.	Svercel M, Saladin B, van Moorsel SJ, Wolf S, Bagheri HC	BMC Res Notes	10.1186/1756-0500-4-357	2011
Phylogeny	Fibrisoma montanum sp. nov., isolated from soil of Mountain Danxia, China.	Huang Y, Niu Y, Wang G, Zheng S	Arch Microbiol	10.1007/s00203-019-01741-w	2019
Phylogeny	Fibrisoma limi gen. nov., sp. nov., a filamentous bacterium isolated from tidal flats.	Filippini M, Kaech A, Ziegler U, Bagheri HC	Int J Syst Evol Microbiol	10.1099/ijs.0.025395-0	2010

Straininfo Link

@ref	Straininfo	Culture collections
73346	406396	DSM 22564, CCUG 58137

Culture collection no.

Culture collection no.
DSM 22564
CCUG 58137
BUZ 3

References

#16402	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22564
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#61605	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58137
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#73346	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406396.1 )

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