Cite this strain

Desulfocurvibacter africanus subsp. uniflagellum (DSM 23860, JCM 15510, KCTC 5649)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4171

Type strain

Strain Designation SR-1, LS

Culture col. no. DSM 23860 JCM 15510 KCTC 5649 SR-1 LS

NCBI tax ID(s) 1511599

Special Collections DSMZ JCM KCTC Literature strains

Links

Name and taxonomic classification

Desulfocurvibacter africanus subsp. uniflagellum SR-1 is an anaerobe, mesophilic, motile bacterium that was isolated from subsurface aquifer sediment.

motile vibrio-shaped anaerobe mesophilic 16S sequence Bacteria

SI-ID 408171

DSM 23860

Last LPSN update 2024-12-09 10:43:35

Domain Bacteria

Phylum Pseudomonadota

Class Deltaproteobacteria

Order Desulfovibrionales

Family Desulfovibrionaceae

Genus Desulfocurvibacter

Species Desulfocurvibacter africanus subsp. uniflagellum

Full scientific name Desulfocurvibacter africanus subsp. uniflagellum (Castañeda-Carrión et al. 2010) Spring et al. 2019

Synonyms (1)

Desulfovibrio africanus subsp. uniflagellum

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape	Flagellum arrangement
23218	3.5 µm	0.5 µm	vibrio-shaped	polar
67771				monotrichous, polar
67771

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17409	DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)		Medium recipe at MediaDive	Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17409	positive	growth	37	mesophilic
23218	positive	growth	20-40
23218	negative	growth	15
23218	negative	growth	45
23218	positive	optimum	37	mesophilic
67770	positive	growth	37	mesophilic
67771	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH
23218	positive	optimum	7.0
23218	positive	growth	6.25-7.65

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23218	NaCl	positive	growth	0-4.25 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23218	17632 ChEBI	nitrate	-	electron acceptor

Oxygen tolerance

@ref	Oxygen tolerance
17409	anaerobe
67771	anaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Contamination
#Environmental	#Terrestrial

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17409	subsurface aquifer sediment	New Mexico, Shiprock	USA	USA	North America
23218	subsurface sediments of a uranium-contaminated site in Shiprock
67770	Subsurface sediments of a uranium-contaminated site in Shiprock	NM	USA	USA	North America
67771	From subsurface sediments of a uranium contaminated aquifer	New Mexico, Shiprock	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence EU659693 (>99% sequence identity) for Desulfocurvibacter africanus subclade from Microbeatlas

Aquatic Samples	198
Soil Samples	228
Animal Samples	197
Plant Samples	100
Total Samples	723

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
17409	1	Risk group (German classification) According to TRBA 466

Sequence information

GC content

@ref	GC-content (mol%)
17409	62.4
67770	62.4

16S sequences

@ref	Description	Accession	Database
23218	Desulfovibrio africanus subsp. uniflagellum strain SR-1 16S ribosomal RNA gene, partial sequence	EU659693
17409	Plexaura flexuosa isolate ML-D-41 18S ribosomal RNA gene and internal transcribed spacer 1, partial sequence	EF659693

Genome-based predictions

External links

Straininfo Link

@ref	Straininfo	Culture collections
73673	408171	DSM 23860

Culture collection no.

Culture collection no.
DSM 23860
JCM 15510
KCTC 5649
SR-1
LS

References

#17409	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23860
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23218	I. Nydia Castaneda-Carrión, Cody S. Sheik, Lee R. Krumholz: Desulfovibrio africanus subsp. uniflagellum subsp. nov., a sulfate-reducing bacterium from a uranium-contaminated subsurface aquifer. IJSEM 60: 880 - 886 2010 ( DOI 10.1099/ijs.0.006668-0 , PubMed 19661495 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#73673	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408171.1 )

Rate our new design

Content

About us