Cite this strain

Halorhodospira neutriphila (DSM 15116, SG 3301, JCM 17835)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4285

Type strain

Culture col. no. DSM 15116 SG 3301 JCM 17835

NCBI tax ID(s) 168379

Special Collections DSMZ JCM

Links

Name and taxonomic classification

Halorhodospira neutriphila DSM 15116 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from microbial mat in marine saltern.

Gram-negative anaerobe mesophilic genome sequence 16S sequence Bacteria

SI-ID 100679

DSM 15116, JCM 17835

Last LPSN update 2024-12-09 10:43:36

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Chromatiales

Family Halorhodospiraceae

Genus Halorhodospira

Species Halorhodospira neutriphila

Full scientific name Halorhodospira neutriphila Hirschler-Réa et al. 2003

BacDive ID	Other strains from **Halorhodospira neutriphila** (1)	Type strain
4284	H. neutriphila DSM 15115, SG 3304

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.75
125439	negative	91.3

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5718	HALORHODOSPIRA MEDIUM (DSMZ Medium 999)		Medium recipe at MediaDive	Name: HALORHODOSPIRA MEDIUM (DSMZ Medium 999) Composition: NaCl 100.0 g/l NaHCO3 2.0 g/l MgCl2 x 6 H2O 2.0 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l Na2S x 9 H2O 0.75 g/l NH4Cl 0.5 g/l CaCl2 x 2 H2O 0.05 g/l FeSO4 x 7 H2O 0.0011 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.00019 g/l Pyridoxamine 5e-05 g/l MnCl2 x 2 H2O 5e-05 g/l ZnCl2 4.2e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Vitamine B12 2e-05 g/l Nicotinate 2e-05 g/l Na2MoO4 x 2 H2O 1.8e-05 g/l p-Aminobenzoate 1e-05 g/l Thiamine 1e-05 g/l Pantothenate 5e-06 g/l Biotine 2e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
5718	CHROMATIUM SALEXIGENS MEDIUM (DSMZ Medium 421)		Medium recipe provided by DSMZ

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5718	positive	growth	30	mesophilic
5718	positive	growth	28
67770	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.847
125439		98.7

Oxygen tolerance

5718

Oxygen toleranceanaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Microbial community	#Microbial mat
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5718	microbial mat in marine saltern	Rhone Delta	France	FRA	Europe
67770	Microbial mat in marine saltern

Taxonmaps

69479

Global distribution of 16S sequence AJ318525 (>99% sequence identity) for Halorhodospira neutriphila subclade from Microbeatlas

Aquatic Samples	87
Soil Samples	7
Animal Samples	13
Plant Samples	2
Total Samples	109

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
5718	1	Risk group (German classification) According to TRBA 466

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	74.5	high performance liquid chromatography (HPLC)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Halorhodospira neutriphila gene for 16S ribosomal RNA, partial sequence, strain: JCM 17835	AB643473	1507		168379
20218	Halorhodospira neutrophila partial 16S rRNA gene, strain SG3301	AJ318525	1356		168379

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Halorhodospira neutriphila DSM 15116	GCA_016584055	contig		168379
66792	Halorhodospira neutriphila strain DSM 15116	168379.4	wgs	PATRIC	168379

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Halorhodospira neutriphila DSM 15116
NCBI: GCA_016584055

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	yes	78.60	no
125439	gram_stain	BacteriaNetⓘ	negative	91.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	85.00	no

Predictions from Diaspora project based on:
Halorhodospira neutriphila strain DSM 15116
PATRIC: 168379.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.75	no
125438	anaerobic	anaerobicⓘ	yes	52.18	no
125438	spore-forming	spore-formingⓘ	no	90.85	no
125438	aerobic	aerobicⓘ	no	68.38	yes
125438	thermophilic	thermophileⓘ	no	86.26	no
125438	flagellated	motile2+ⓘ	yes	74.00	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation and characterization of spirilloid purple phototrophic bacteria forming red layers in microbial mats of Mediterranean salterns: description of Halorhodospira neutriphila sp. nov. and emendation of the genus Halorhodospira.	Hirschler-Rea A, Matheron R, Riffaud C, Moune S, Eatock C, Herbert RA, Willison JC, Caumette P	Int J Syst Evol Microbiol	10.1099/ijs.0.02226-0	2003

Straininfo Link

@ref	Straininfo	Culture collections
73779	100679	DSM 15116, JCM 17835

Culture collection no.

Culture collection no.
DSM 15116
SG 3301
JCM 17835

References

#5718	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15116
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#73779	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100679.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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