Cite this strain

Qipengyuania seohaensis (DSM 16221, KCTC 12228, SW-135)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5384

Type strain

Strain Designation SW-135

Culture col. no. DSM 16221 KCTC 12228 SW-135 IAM 15371 CGMCC 1.8708 1 more

NCBI tax ID(s) 266951

Special Collections DSMZ JCM KCTC

Links

Name and taxonomic classification

Qipengyuania seohaensis SW-135 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea water of tidal flat.

Gram-negative aerobe mesophilic genome sequence 16S sequence Bacteria

SI-ID 343917

DSM 16221, KCTC 12228, JCM 21815, IAM 15371

Last LPSN update 2024-12-09 10:43:43

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Erythrobacteraceae

Genus Qipengyuania

Species Qipengyuania seohaensis

Full scientific name Qipengyuania seohaensis (Yoon et al. 2005) Xu et al. 2020

Synonyms (1)

Erythrobacter seohaensis

Morphology

Cell morphology

@ref	Gram stain
67771	negative
125439	negative
125438	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6336	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6336	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic

Physiology and metabolism

Observation

67770

Observationquinones: Q-10

Spore formation

@ref	Spore formation	Confidence
125439		98
125438		93.356

Oxygen tolerance

@ref	Oxygen tolerance
67771	aerobe
125439	obligate aerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Tidal flat

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6336	sea water of tidal flat	Daepo beach	Republic of Korea	KOR	Asia
67770	Tidal flat of the Yellow Sea		Republic of Korea	KOR	Asia
67771	From seawater	the west sea	Republic of Korea	KOR	Asia

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
6336	1	Risk group (German classification) According to TRBA 466

Sequence information

GC content

@ref	GC-content (mol%)	Method
6336	62.2	high performance liquid chromatography (HPLC)
67770	61.7	genome sequence analysis

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6336	Erythrobacter seohaensis 16S ribosomal RNA gene, partial sequence	AY562219	1444		266951

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Qipengyuania seohaensis SW-135	GCA_002795865	complete		266951

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Qipengyuania seohaensis SW-135
NCBI: GCA_002795865

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.00	no
125439	motility	BacteriaNetⓘ	no	61.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.10	no

Predictions from Diaspora project based on:
Qipengyuania seohaensis SW-135
NCBI: GCA_002795865.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.47	yes
125438	anaerobic	anaerobicⓘ	no	93.96	no
125438	aerobic	aerobicⓘ	yes	87.17	yes
125438	spore-forming	spore-formingⓘ	no	93.36	no
125438	thermophilic	thermophileⓘ	no	97.53	no
125438	flagellated	motile2+ⓘ	no	66.68	no

External links

Literature

Title	Authors	Journal	DOI	Year
Structure and Function Insight of the alpha-Glucosidase QsGH13 From Qipengyuania seohaensis sp. SW-135.	Zhai X, Wu K, Ji R, Zhao Y, Lu J, Yu Z, Xu X, Huang J	Front Microbiol	10.3389/fmicb.2022.849585	2022

Straininfo Link

@ref	Straininfo	Culture collections
74874	343917	DSM 16221, KCTC 12228, JCM 21815, IAM 15371

Culture collection no.

Culture collection no.
DSM 16221
KCTC 12228
SW-135
IAM 15371
CGMCC 1.8708
JCM 21815

References

#6336	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16221
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#74874	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID343917.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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