Cite this strain

Halobiforma haloterrestris (DSM 13078, 135, 147-98)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5872

Type strain

Strain Designation 135, 147-98

Culture col. no. DSM 13078 135 147-98 CGMCC 1.6136 CGMCC 1.3780 1 more

NCBI tax ID(s) 148448

Special Collections DSMZ JCM

Links

Name and taxonomic classification

Halobiforma haloterrestris 135 is a thermophilic archaeon that was isolated from hypersaline soil.

thermophilic genome sequence 16S sequence Archaea

SI-ID 100670

DSM 13078, JCM 11627, CGMCC 1.3780

Last LPSN update 2024-12-09 10:43:46

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Natrialbaceae

Genus Halobiforma

Species Halobiforma haloterrestris

Full scientific name Halobiforma haloterrestris Hezayen et al. 2002

Synonyms (1)

"Natronobacterium haloterrestre"

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	93.9

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4900	HALOBACTERIA MEDIUM (DSMZ Medium 372)		Medium recipe at MediaDive	Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4900	positive	growth	42	thermophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		93.9

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	91.9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4900	hypersaline soil	100Km to the north of Aswan	Egypt	EGY	Africa
67770	Hypersaline soil close to Aswan		Egypt	EGY	Africa

Taxonmaps

69479

Global distribution of 16S sequence AF333760 (>99% sequence identity) for Halobiforma from Microbeatlas

Aquatic Samples	5
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	6

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
4900	1	Risk group (German classification) According to TRBA 466

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	66.9	high performance liquid chromatography (HPLC)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4900	Halobacteriaceae gen. sp. 135 16S ribosomal RNA gene, partial sequence	AF333760	1457		148448
124043	Halobiforma haloterrestris gene for 16S rRNA, complete sequence, strain: JCM 11627.	AB663434	1471		148448

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Halobiforma haloterrestris DSM 13078	2693429869	draft	JGI IMG/M	148448
67770	Halobiforma haloterrestris DSM 13078	GCA_900112205	scaffold		148448
66792	Halobiforma haloterrestris strain DSM 13078	148448.7	wgs	PATRIC	148448

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Halobiforma haloterrestris DSM 13078
NCBI: GCA_900112205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.90	no
125439	motility	BacteriaNetⓘ	yes	53.90	no
125439	gram_stain	BacteriaNetⓘ	negative	93.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	91.90	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of a novel halophilic archaeon, Halobiforma haloterrestris gen. nov., sp. nov., and transfer of Natronobacterium nitratireducens to Halobiforma nitratireducens comb. nov.	Hezayen FF, Tindall BJ, Steinbuchel A, Rehm BHA	Int J Syst Evol Microbiol	10.1099/00207713-52-6-2271	2002

Straininfo Link

@ref	Straininfo	Culture collections
75352	100670	DSM 13078, JCM 11627, CGMCC 1.3780

Culture collection no.

Culture collection no.
DSM 13078
135
147-98
CGMCC 1.6136
CGMCC 1.3780
JCM 11627

References

#4900	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13078
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#75352	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100670.1 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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