Cite this strain

Haloarcula quadrata (DSM 11927, JCM 11048, 801030/1)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5907

Type strain

Strain Designation 801030/1

Culture col. no. DSM 11927 JCM 11048 801030/1 CGMCC 1.6164 CGMCC 1.4298 1 more

NCBI tax ID(s) 182779

Special Collections DSMZ JCM

Links

Name and taxonomic classification

Haloarcula quadrata 801030/1 is a mesophilic archaeon that was isolated from brine pool.

mesophilic genome sequence 16S sequence Archaea

SI-ID 44175

ATCC 700850, DSM 11927, JCM 11048

Last LPSN update 2024-12-09 10:43:46

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloarculaceae

Genus Haloarcula

Species Haloarcula quadrata

Full scientific name Haloarcula quadrata Oren et al. 1999

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4542	HALOBACTERIUM MEDIUM (DSMZ Medium 97)		Medium recipe at MediaDive	Name: HALOBACTERIUM MEDIUM (DSMZ Medium 97) Composition: NaCl 250.0 g/l Agar 20.0 g/l MgSO4 x 7 H2O 20.0 g/l Yeast extract 10.0 g/l Casamino acids 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O 0.05 g/l MnSO4 x H2O 0.0002 g/l Distilled water
4542	HALOBACTERIA MEDIUM (DSMZ Medium 372)		Medium recipe at MediaDive	Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4542	positive	growth	35	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	90.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic
#Condition	#Saline

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4542	brine pool	Sinai, sabkha Gavish	Egypt	EGY	Africa
67770	Brine water from Sebkha Gavish	Southern Sinai	Egypt	EGY	Africa

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
4542	1	Risk group (German classification) According to TRBA 466

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	60.1	thermal denaturation, midpoint method (Tm)

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Haloarcula sp. gene for 16S rRNA	AB010964	1471	182779
20218	Haloarcula sp. gene for 16S rRNA	AB010965	1470	182779
20218	Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048	AB355988	1472	182779
20218	Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048	AB605777	1472	182779
20218	Haloarcula quadrata strain JCM11048 16S ribosomal RNA (rrnA) gene, complete sequence	EF645689	1472	182779
20218	Haloarcula quadrata strain JCM11048 16S ribosomal RNA (rrnB) gene, complete sequence	EF645694	1472	182779
124043	Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048.	LC198787	1405	182779
124043	Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048.	LC198788	1405	182779

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Haloarcula quadrata DSM 11927	2778260947	draft	JGI IMG/M	182779
67770	Haloarcula quadrata DSM 11927	GCA_003634715	contig		182779
66792	Haloarcula quadrata strain DSM 11927	182779.7	wgs	PATRIC	182779

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Haloarcula quadrata DSM 11927
NCBI: GCA_003634715

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	85.10	no
125439	motility	BacteriaNetⓘ	yes	54.10	no
125439	gram_stain	BacteriaNetⓘ	negative	80.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	90.50	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloarcula quadrata sp. nov., a square, motile archaeon isolated from a brine pool in Sinai (Egypt).	Oren A, Ventosa A, Gutierrez MC, Kamekura M	Int J Syst Bacteriol	10.1099/00207713-49-3-1149	1999

Straininfo Link

@ref	Straininfo	Culture collections
75388	44175	ATCC 700850, DSM 11927, JCM 11048

Culture collection no.

Culture collection no.
DSM 11927
JCM 11048
801030/1
CGMCC 1.6164
CGMCC 1.4298
ATCC 700850

References

#4542	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11927
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#75388	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44175.1 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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