Cite this strain

Halanaerobacter jeridensis (DSM 23230, JCM 16696, CEJFG43)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5982

Type strain

Strain Designation CEJFG43

Culture col. no. DSM 23230 JCM 16696 CEJFG43

NCBI tax ID(s) 706427

Special Collections DSMZ JCM Literature strains

Links

Name and taxonomic classification

Halanaerobacter jeridensis CEJFG43 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from black sediment below the salt crust of a hypersaline lake.

Gram-negative motile anaerobe thermophilic genome sequence 16S sequence Bacteria

SI-ID 402114

DSM 23230

Last LPSN update 2024-12-09 10:43:47

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Halanaerobiales

Family Halobacteroidaceae

Genus Halanaerobacter

Species Halanaerobacter jeridensis

Full scientific name Halanaerobacter jeridensis Mezghani et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Motility
30446	negative	4.25 µm	1.2 µm

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16760	HALANAEROBACTER JERIDENSE MEDIUM (DSMZ Medium 1375)		Medium recipe at MediaDive	Name: HALANAEROBACTER JERIDENSE MEDIUM (DSMZ Medium 1375) Composition: Na2CO3 25.3 g/l Glucose 15.44 g/l MgCl2 x 6 H2O 10.0 g/l KCl 2.0 g/l NH4Cl 1.0 g/l K2HPO4 x 3 H2O 0.5 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l ZnSO4 x 7 H2O 0.0018 g/l CoSO4 x 7 H2O 0.0018 g/l CaCl2 x 2 H2O 0.001 g/l Resazurin 0.001 g/l FeSO4 x 7 H2O 0.001 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l CuSO4 x 5 H2O 0.0001 g/l H3BO3 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l Na2SeO3 x 5 H2O 3e-06 g/l Na2S x 9 H2O Yeast extract L-Cysteine Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16760	positive	growth	40	thermophilic
30446	positive	growth	20-60
30446	positive	optimum	45	thermophilic
67770	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH
30446	positive	optimum	8.3
30446	positive	growth	5.5-9.5

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30446	NaCl	positive	growth	6-30 %
30446	NaCl	positive	optimum	15 %

Spore formation

30446

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30446	28260 ChEBI	galactose	+	carbon source
30446	17754 ChEBI	glycerol	+	carbon source
30446	15361 ChEBI	pyruvate	+	carbon source
30446	16634 ChEBI	raffinose	+	carbon source
30446	33942 ChEBI	ribose	+	carbon source
30446	18222 ChEBI	xylose	+	carbon source

Oxygen tolerance

@ref	Oxygen tolerance
30446	anaerobe
125439	anaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Sediment
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16760	black sediment below the salt crust of a hypersaline lake	El Jerid lake	Tunisia	TUN	Africa
67770	Sediment collected below the salt crust on the hypersaline EI Jerid lake in southern Tunisia

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
16760	1	Risk group (German classification) According to TRBA 466

Sequence information

GC content

@ref	GC-content (mol%)	Method
16760	33.3	high performance liquid chromatography (HPLC)
30446	33.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16760	Halanaerobacter jeridensis strain CEJFG43 16S ribosomal RNA gene, partial sequence	GU265900	1435		706427

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Halanaerobacter jeridensis DSM 23230	GCA_016908315	contig		706427
66792	Halanaerobacter jeridensis strain DSM 23230	706427.3	wgs	PATRIC	706427
66792	Halanaerobacter jeridensis DSM 23230	2901107112	draft	JGI IMG/M	706427

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Halanaerobacter jeridensis DSM 23230
NCBI: GCA_016908315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	75.40	no
125439	motility	BacteriaNetⓘ	yes	79.30	no
125439	gram_stain	BacteriaNetⓘ	positive	84.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.60	no

Predictions from Diaspora project based on:
Halanaerobacter jeridensis strain DSM 23230
PATRIC: 706427.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	81.25	no
125438	anaerobic	anaerobicⓘ	yes	87.17	yes
125438	spore-forming	spore-formingⓘ	yes	57.27	no
125438	aerobic	aerobicⓘ	no	93.88	no
125438	thermophilic	thermophileⓘ	no	88.07	yes
125438	flagellated	motile2+ⓘ	yes	76.43	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halanaerobacter jeridensis sp. nov., isolated from a hypersaline lake.	Mezghani M, Alazard D, Karray F, Cayol JL, Joseph M, Postec A, Fardeau ML, Tholozan JL, Sayadi S	Int J Syst Evol Microbiol	10.1099/ijs.0.036301-0	2011

Straininfo Link

@ref	Straininfo	Culture collections
75471	402114	DSM 23230

Culture collection no.

Culture collection no.
DSM 23230
JCM 16696
CEJFG43

References

#16760	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23230
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#30446	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26781 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#75471	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402114.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

Rate our new design

Content

About us