Cite this strain

Albibacter methylovorans (DSM 22840, DSM 13819, DM 10)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7215

Type strain

Strain Designation DM 10

Culture col. no. DSM 22840 DSM 13819 DM 10 VKM B-2236

NCBI tax ID(s) 128802

Special Collections DSMZ

Links

Name and taxonomic classification

Albibacter methylovorans DM 10 is a mesophilic bacterium that was isolated from ground water contaminated with dichloromethane.

mesophilic 16S sequence Bacteria

SI-ID 49528

DSM 13819, VKM B-2236, DSM 22840

Last LPSN update 2024-12-09 10:43:55

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Methylocystaceae

Genus Albibacter

Species Albibacter methylovorans

Full scientific name Albibacter methylovorans Doronina et al. 2001

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16420	MINERAL MEDIUM WITH VITAMINS (DSMZ Medium 462)		Medium recipe at MediaDive	Name: MINERAL MEDIUM (BRUNNER) WITH VITAMINS (DSMZ Medium 462) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Casein peptone 15.0 g/l Peptone 5.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Meat extract 3.0 g/l Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l Pyridoxamine 0.000125 g/l ZnSO4 x 7 H2O 0.0001 g/l Nicotinic acid 5e-05 g/l Vitamin B12 5e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l p-Aminobenzoate 2.5e-05 g/l Thiamine-HCl x 2 H2O 2.5e-05 g/l NiCl2 x 6 H2O 2e-05 g/l Calcium pantothenate 1.25e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Biotin 5e-06 g/l Distilled water
16420	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16420	positive	growth	28	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Contamination
#Environmental	#Aquatic

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
16420	ground water contaminated with dichloromethane	Switzerland	CHE	Europe

Taxonmaps

69479

Global distribution of 16S sequence FR733694 (>99% sequence identity) for Albibacter methylovorans from Microbeatlas

Aquatic Samples	6
Soil Samples	4
Animal Samples	10
Plant Samples	1
Total Samples	21

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
16420	1	Risk group (German classification) According to TRBA 466

Sequence information

GC content

@ref	GC-content (mol%)	Method
16420	66.7	thermal denaturation, midpoint method (Tm)

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Albibacter methylovorans partial 16S rRNA gene, type strain DSM22840T	FR733694	1476		128802
16420	Albobacter methylovorans 16S ribosomal RNA gene, partial sequence	AF273213	1409		128802

Genome-based predictions

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chenggangzhangella methanolivorans gen. nov., sp. nov., a member of the family Methylocystaceae, transfer of Methylopila helvetica Doronina et al. 2000 to Albibacter helveticus comb. nov. and emended description of the genus Albibacter.	Yang LQ, Liu L, Salam N, Xiao M, Kim CJ, Hozzein WN, Park DJ, Li WJ, Zhang HW	Int J Syst Evol Microbiol	10.1099/ijsem.0.001062	2016
Phylogeny	Albibacter methylovorans gen. nov., sp. nov., a novel aerobic, facultatively autotrophic and methylotrophic bacterium that utilizes dichloromethane.	Doronina NV, Trotsenko YA, Tourova TP, Kuznetsov BB, Leisinger T	Int J Syst Evol Microbiol	10.1099/00207713-51-3-1051	2001

Straininfo Link

@ref	Straininfo	Culture collections
76667	49528	DSM 13819, VKM B-2236, DSM 22840

Culture collection no.

Culture collection no.
DSM 22840
DSM 13819
DM 10
VKM B-2236

References

#16420	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22840
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#76667	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49528.1 )

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