Cite this strain

Microbacterium awajiense (DSM 18907, JCM 16544, MBIC 08276)

BacDive ID 7440

Type strain

Strain Designation YM13-414

Culture col. no. DSM 18907 JCM 16544 MBIC 08276 YM13-414 NBRC 103565 1 more

NCBI tax ID(s) 415214

Special Collections DSMZ JCM

Links

Microbacterium awajiense YM13-414 is a bacterium that was isolated from sand sediment.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406323

JCM 16544,NBRC 103565,DSM 18907

@ref 20215

Last LPSN update 2026-02-09 11:19:28

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium awajiense

Full scientific name Microbacterium awajiense Kageyama et al. 2008

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7767	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7767	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Observation

67770

Observationquinones: MK-12, MK-13, MK-14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7767	sand sediment	Awaji Island, shore of Yura	Japan	JPN	Asia
67770	Sediment (at a depth of 20 cm) of the shore of Yura	Awaji Island, Hyogo Pref.	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7767	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953654v1 assembly for Microbacterium awajiense JCM 16544	scaffold	GCA_039536545	415214	73.39

Genome browser: GCA_039536545

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7767	Microbacterium awajiense gene for 16S rRNA, partial sequence	AB286027	1469		415214

GC content

@ref	GC-content (mol%)
7767	70
67770	70

Genome-based predictions

Literature

References

#7767	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18907
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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