Cite this strain

Actinoplanes globisporus (DSM 43857, ATCC 23056, DSM 43894)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7805

Type strain

Strain Designation SS/37

Culture col. no. DSM 43857 ATCC 23056 DSM 43894 IFO 13912 IMET 9263 10 more

NCBI tax ID(s) 1120949 113565

Special Collections DSMZ JCM KCTC

Links

Name and taxonomic classification

Actinoplanes globisporus SS/37 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming mesophilic genome sequence 16S sequence Bacteria

SI-ID 88614

ATCC 23056, DSM 43857, DSM 43894, IFO 13912, IMET 9263, JCM 3186, CCRC 13628, NCIMB 12638, KCTC 9591, NBRC 13912, BCRC 13628

Last LPSN update 2024-12-09 10:43:59

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Actinoplanes

Species Actinoplanes globisporus

Full scientific name Actinoplanes globisporus (Thiemann 1967) Stackebrandt and Kroppenstedt 1988

Synonyms (2)

Paractinoplanes globisporus
Amorphosporangium globisporum

BacDive ID	Other strains from **Actinoplanes globisporus** (2)	Type strain
7806	A. globisporus 996-3, DSM 46643, IMET 9051
128603	A. globisporus STH00319(ZIMET), HKI 0319

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.8

Multimedia

@ref:	11339
manual_annotation:	1
multimedia content:	DSM_43857.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43857.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ

Culture and growth conditions

Culture medium

@ref	Name	Medium link
11339	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe provided by DSMZ
11339	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive
11339	BENNETT'S AGAR (DSMZ Medium 548)	Medium recipe at MediaDive

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
11339	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
11339	soil	Como, Appiano Gentile	Italy	ITA	Europe
67770	Soil	Appiano Gentile, Como	Italy	ITA	Europe

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
11339	1	Risk group (German classification) According to TRBA 466

Sequence information

GC content

@ref	GC-content (mol%)	Method
67770	70.9	genome sequence analysis

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Actinoplanes globisporus gene for 16S rRNA, partial sequence	AB037003	1476	113565
20218	Actinoplanes globisporus partial 16S rRNA gene, strain IMSNU 20030T	AJ277570	1452	113565
20218	Actinoplanes globisporus gene for 16S ribosomal RNA, partial sequence	AB048219	1444	113565

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Actinoplanes globisporus DSM 43857	1120949.3	wgs	PATRIC	1120949
66792	Actinoplanes globisporus DSM 43857	2515154017	draft	JGI IMG/M	1120949
67770	Actinoplanes globisporus DSM 43857	GCA_000379645	scaffold		1120949

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Actinoplanes globisporus DSM 43857
NCBI: GCA_000379645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	84.10	no
125439	motility	BacteriaNetⓘ	no	87.60	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Predictions from Diaspora project based on:
Actinoplanes globisporus DSM 43857
PATRIC: 1120949.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.09	no
125438	anaerobic	anaerobicⓘ	no	91.27	no
125438	spore-forming	spore-formingⓘ	yes	88.09	no
125438	aerobic	aerobicⓘ	yes	89.84	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	62.43	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Actinoplanes deserti sp. nov., isolated from a desert soil sample.	Habib N, Khan IU, Chu X, Xiao M, Li S, Fang BZ, Zhi XY, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-018-1121-x	2018
Phylogeny	Actinoplanes rhizophilus sp. nov., an actinomycete isolated from the rhizosphere of Sansevieria trifasciata Prain.	He H, Xing J, Liu C, Li C, Ma Z, Li J, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.000646	2015
Phylogeny	Actinoplanes rishiriensis sp. nov., a novel motile actinomycete isolated by rehydration and centrifugation method.	Yamamura H, Shimizu A, Nakagawa Y, Hamada M, Otoguro M, Tamura T, Hayakawa M	J Antibiot (Tokyo)	10.1038/ja.2012.8	2012

Straininfo Link

@ref	Straininfo	Culture collections
77247	88614	ATCC 23056, DSM 43857, DSM 43894, IFO 13912, IMET 9263, JCM 3186, CCRC 13628, NCIMB 12638, KCTC 9591, NBRC 13912, BCRC 13628

Culture collection no.

Culture collection no.
DSM 43857
ATCC 23056
DSM 43894
IFO 13912
IMET 9263
JCM 3186
KCC A-0186
NBRC 13912
SS/37
TBRC 10999
NCIMB 12638
KCTC 9591
IMSNU 20030
IFM 1259
BCRC 13628

References

#11339	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43857
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#77247	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID88614.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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