Cite this strain

Acetobacter aceti subsp. xylinus (DSM 2325, ATCC 11142, NCIB 5346)

Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 86

Type strain

Culture col. no. DSM 2325 ATCC 11142 NCIB 5346 NCTC 5346 NCIMB 5346 6 more

NCBI tax ID(s) 28448

Special Collections DSMZ JCM

Links

Name and taxonomic classification

Acetobacter aceti subsp. xylinus DSM 2325 is a mesophilic, Gram-negative bacterium that produces polysaccharides.

polysaccharide production Gram-negative mesophilic genome sequence Bacteria

SI-ID 92075

LMG 1518, ATCC 11142, CECT 473, DSM 2325, LMG 1538, NCIB 5346, NCTC 5346, NCIMB 5346, LMD 75.1, CCRC 12334, BCRC 12334, IAM 14352, LMD 75, NCIM 2526, NRRL B-469, JCM 21166

Last LPSN update 2024-12-09 10:43:06

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Acetobacter

Species Acetobacter aceti subsp. xylinus

Full scientific name Acetobacter aceti subsp. xylinus corrig. (Brown 1886) De Ley and Frateur 1974 (Approved Lists 1980)

Synonyms (8)

Acetobacter aceti subsp. xylinum
Gluconoacetobacter xylinus
Acetobacter xylinum
Gluconacetobacter xylinus
Komagataeibacter xylinus
"Komagatabacter xylinus"
"Bacterium xylinum"
Acetobacter xylinus

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.333
125439	negative	97

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
732	GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)		Medium recipe at MediaDive	Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water
732	YPM MEDIUM (DSMZ Medium 360)		Medium recipe provided by DSMZ

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
732	positive	growth	26	mesophilic
732	positive	growth	25
67770	positive	growth	25	mesophilic

Physiology and metabolism

Observation

67770

Observationquinones: Q-10

Spore formation

@ref	Spore formation	Confidence
125438		91.055
125439		95.7

Compound production

@ref	Compound
732	cellulose
732	acetic acid

Isolation, sampling and environmental information

Safety information

Risk assessment

@ref	Biosafety level	Biosafety level comment
732	1	Risk group (German classification) According to TRBA 466

Sequence information

GC content

732

GC-content (mol%)58.4

Genome sequences

@ref	Description	Accession	Assembly level	Database	NCBI tax ID
66792	Komagataeibacter xylinus DSM 2325	GCA_004006375	chromosome		28448
66792	Komagataeibacter xylinus strain DSM 2325	28448.17	complete	PATRIC	28448
66792	Komagataeibacter xylinus DSM 2325	2841172115	complete	JGI IMG/M	28448

Genome-based predictions

Predictions

Predictions from Diaspora project based on:
Komagataeibacter xylinus DSM 2325
PATRIC: 2841172115

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.70	no
125439	motility	BacteriaNetⓘ	yes	72.00	no
125439	gram_stain	BacteriaNetⓘ	negative	97.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	77.70	no

Predictions from Diaspora project based on:
Komagataeibacter xylinus strain DSM 2325
PATRIC: 28448.17

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.33	no
125438	anaerobic	anaerobicⓘ	no	91.00	no
125438	spore-forming	spore-formingⓘ	no	91.06	no
125438	aerobic	aerobicⓘ	yes	78.23	no
125438	thermophilic	thermophileⓘ	no	98.07	yes
125438	flagellated	motile2+ⓘ	no	59.66	no

External links

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Differentiation of species of the family Acetobacteraceae by AFLP DNA fingerprinting: Gluconacetobacter kombuchae is a later heterotypic synonym of Gluconacetobacter hansenii.	Cleenwerck I, De Wachter M, Gonzalez A, De Vuyst L, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.005157-0	2009
Genetics	Genomic and metabolic analysis of Komagataeibacter xylinus DSM 2325 producing bacterial cellulose nanofiber.	Jang WD, Kim TY, Kim HU, Shim WY, Ryu JY, Park JH, Lee SY	Biotechnol Bioeng	10.1002/bit.27150	2019

Straininfo Link

@ref	Straininfo	Culture collections
69769	92075	LMG 1518, ATCC 11142, CECT 473, DSM 2325, LMG 1538, NCIB 5346, NCTC 5346, NCIMB 5346, LMD 75.1, CCRC 12334, BCRC 12334, IAM 14352, LMD 75, NCIM 2526, NRRL B-469, JCM 21166

Culture collection no.

Culture collection no.
DSM 2325
ATCC 11142
NCIB 5346
NCTC 5346
NCIMB 5346
LMG 1538
LMG 1518
LMD 75.1
IAM 14352
CECT 473
JCM 21166

References

#732	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2325
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69769	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92075.1 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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